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    • Jupyter Notebook
      1200Updated Apr 9, 2026Apr 9, 2026
    • Comprehensive ETL processing to move CDM data into cbioportal
      Python
      0010Updated Mar 25, 2026Mar 25, 2026
    • msk_cdm

      Public
      Prototype for new CDM repo layout
      Python
      2200Updated Nov 26, 2025Nov 26, 2025
    • Mapping ICD billing codes and terms to a standard ontology
      Jupyter Notebook
      3600Updated Jun 16, 2025Jun 16, 2025
    • R
      MIT License
      1000Updated May 15, 2025May 15, 2025
    • ctDNA_CAT

      Public
      Data and code for liquid biopsy/cancer associated thromboembolism project
      Jupyter Notebook
      Other
      0200Updated Feb 18, 2025Feb 18, 2025
    • code for combining information retrieval (i.e. ColBERT) and LLMs for annotating oncologic EHR datasets
      Jupyter Notebook
      1100Updated Feb 9, 2025Feb 9, 2025
    • Code and sample data for the MSK-CHORD manuscript (public version)
      Jupyter Notebook
      MIT License
      2900Updated Jan 27, 2025Jan 27, 2025
    • 0000Updated Apr 9, 2024Apr 9, 2024
    • R
      1000Updated Aug 20, 2021Aug 20, 2021
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