Skip to content

@clinical-data-mining clinical-data-mining

Change the repository type filter

All

    Repositories list

    10 repositories

    • pathology_report_segmentation

      Public
      Jupyter Notebook
      •1•2•0•0•Updated Apr 9, 2026Apr 9, 2026

    • cdm-cbioportal-etl

      Public
      Comprehensive ETL processing to move CDM data into cbioportal
      Python
      •0•0•1•0•Updated Mar 25, 2026Mar 25, 2026

    • msk_cdm

      Public
      Prototype for new CDM repo layout
      Python
      •2•2•0•0•Updated Nov 26, 2025Nov 26, 2025

    • organ-site-mapping

      Public
      Mapping ICD billing codes and terms to a standard ontology
      Jupyter Notebook
      •3•6•0•0•Updated Jun 16, 2025Jun 16, 2025

    • variant-annotation

      Public
      R
      •
      MIT License
      •1•0•0•0•Updated May 15, 2025May 15, 2025

    • ctDNA_CAT

      Public
      Data and code for liquid biopsy/cancer associated thromboembolism project
      Jupyter Notebook
      •
      Other
      •0•2•0•0•Updated Feb 18, 2025Feb 18, 2025

    • onc_IR_LLM

      Public
      code for combining information retrieval (i.e. ColBERT) and LLMs for annotating oncologic EHR datasets
      Jupyter Notebook
      •1•1•0•0•Updated Feb 9, 2025Feb 9, 2025

    • msk-chord-figures-public

      Public
      Code and sample data for the MSK-CHORD manuscript (public version)
      Jupyter Notebook
      •
      MIT License
      •2•9•0•0•Updated Jan 27, 2025Jan 27, 2025

    • allostatic_load_aacr_2024

      Public
      0•0•0•0•Updated Apr 9, 2024Apr 9, 2024

    • NLP_Radiology_MSK_MET

      Public
      R
      •1•0•0•0•Updated Aug 20, 2021Aug 20, 2021
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.