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    34 repositories

    • open-agentic-data-scientist

      Public
      kdense web local version
      Python
      •
      MIT License
      •2•0•0•0•Updated Mar 30, 2026Mar 30, 2026

    • elte_ml_journal_club

      Public
      Machine learning journal club
      0•6•2•0•Updated Mar 16, 2026Mar 16, 2026

    • fundamental

      Public
      Fundamental questions in physics seminar
      0•0•0•0•Updated Feb 24, 2026Feb 24, 2026

    • modellinglab2019

      Public
      Scientific Modelling Computer Lab
      TeX
      •7•2•0•0•Updated Feb 11, 2026Feb 11, 2026

    • pathogens-portal-hu

      Public
      Hungarian Pathongens Portal Node
      HTML
      •0•0•0•0•Updated Jan 5, 2026Jan 5, 2026

    • physdm

      Public
      1•0•0•0•Updated Dec 11, 2025Dec 11, 2025

    • physdl

      Public
      1•0•0•0•Updated Aug 29, 2025Aug 29, 2025

    • SewageGPT

      Public
      Shiny application for visualizing SARS-CoV-2 variant prevalence, mutation patterns, and diagnostic primer mismatches using CoVEO
      1•0•0•0•Updated Mar 17, 2025Mar 17, 2025

    • sewage_db

      Public
      A multi-layered dataset from sewage across five European cities in an SQL database
      1•0•0•0•Updated Feb 17, 2025Feb 17, 2025

    • HGSOC_platinum_response

      Public
      Code for the manuscript "Histopathology and proteomics are synergistic for High-Grade Serous Ovarian Cancer platinum response prediction"
      Jupyter Notebook
      •3•6•0•0•Updated May 27, 2024May 27, 2024

    • coveo

      Public
      Covid-19 Data Portal variant browser application
      PLpgSQL
      •1•0•0•0•Updated Apr 15, 2024Apr 15, 2024

    • meeting-presentations

      Public
      Summaries of journal articles and various tools discussed in csabaiBio meetings
      0•0•0•0•Updated Apr 12, 2024Apr 12, 2024

    • csabaibio.github.io

      Public
      0•0•0•0•Updated Nov 10, 2023Nov 10, 2023

    • SARSCoV2-coinf

      Public
      Supplementary material and analysis pipelines for the detection of co-infection and subclonal recombination in SARS-CoV-2 sequencing data
      HTML
      •0•1•0•0•Updated Oct 31, 2023Oct 31, 2023

    • BirdsEyeViewNet

      Public
      BirdsEyeViewNet: Biomimetic transfer learning for pan-cancer computational histopathology
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 30, 2023Sep 30, 2023

    • study-material

      Public
      A list of useful links, essays, lectures of machine learning research
      MIT License
      •0•0•0•0•Updated Sep 18, 2023Sep 18, 2023

    • hunCRC_scidata

      Public
      Fetch all HunCRC data from Figshare
      Python
      •0•1•0•0•Updated Sep 12, 2023Sep 12, 2023

    • vcf_database

      Public
      R scripts and SQL schema for importing, processing and querying SARS-CoV-2 variant call (VCF) files in a relational database environment.
      R
      •2•0•0•0•Updated Jul 4, 2023Jul 4, 2023

    • rockfish

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated May 30, 2023May 30, 2023

    • nightingale_breast_contest_phase2

      Public
      Nightingale High Risk Breast Cancer Prediction Contest Phase 2
      Python
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated May 14, 2023May 14, 2023

    • nightingale_breast_contest_phase1

      Public
      Nightingale High Risk Breast Cancer Prediction Contest Phase 1
      Jupyter Notebook
      •
      Apache License 2.0
      •1•0•0•0•Updated Mar 21, 2023Mar 21, 2023

    • RBD-AlphaFold2-structures-and-phenotypic-information

      Public
      Scripts needed to reproduce results from the paper "SARS-CoV-2 RBD deep mutational AlphaFold2 structures carry phenotypic information"
      Jupyter Notebook
      •1•0•0•0•Updated Nov 30, 2022Nov 30, 2022

    • ai4covid

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Nov 14, 2022Nov 14, 2022

    • yolov7

      Public
      Implementation of paper - YOLOv7: Trainable bag-of-freebies sets new state-of-the-art for real-time object detectors
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •4.4k•0•0•0•Updated Oct 17, 2022Oct 17, 2022

    • coveo_pcr_primers2021

      Public
      Jupyter Notebook
      •0•2•0•0•Updated Sep 19, 2022Sep 19, 2022

    • mammo-data-utils

      Public
      Python
      •0•0•0•0•Updated Sep 19, 2022Sep 19, 2022

    • yolov5

      Public
      YOLOv5 🚀 in PyTorch > ONNX > CoreML > TFLite
      Python
      •
      GNU General Public License v3.0
      •17k•0•0•0•Updated Jun 29, 2022Jun 29, 2022

    • ai4covid_cosbi_solution

      Public
      Jupyter Notebook
      •0•1•0•1•Updated Mar 30, 2022Mar 30, 2022

    • data-exp-vis-2022

      Public
      Data Exploration and Visualization course
      Jupyter Notebook
      •1•0•0•0•Updated Feb 9, 2022Feb 9, 2022

    • data-exp-vis-2021

      Public
      Jupyter Notebook
      •2•0•0•0•Updated Jun 23, 2021Jun 23, 2021
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