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    18 repositories

    • cehrbert

      Public
      CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks
      machine-learningdeep-learningtransformers
      machine-learningdeep-learningtransformersberttemporal-datadisease-predictionehr-datapretrained-language-model
      Python
      •
      MIT License
      •17•45•7•1•Updated Dec 9, 2025Dec 9, 2025

    • StrategusStudyRepoTemplate

      Public template
      Strategus study repository template
      R
      •
      Apache License 2.0
      •6•0•0•1•Updated Jul 8, 2025Jul 8, 2025

    • Broadsea-WebTools

      Public
      A Docker container that includes the OHDSI WebAPI (running in Apache Tomcat) and the OHDSI web applications.
      Dockerfile
      •
      Apache License 2.0
      •17•0•0•0•Updated Apr 15, 2025Apr 15, 2025

    • g4000

      Public
      JavaScript
      •
      Creative Commons Zero v1.0 Universal
      •76•0•0•1•Updated Oct 16, 2024Oct 16, 2024

    • drug-condition-incidence

      Public
      JavaScript
      •3•3•18•3•Updated Nov 24, 2023Nov 24, 2023

    • gitbucket

      Public
      A Git platform powered by Scala with easy installation, high extensibility & github API compatibility
      Scala
      •
      Apache License 2.0
      •1.3k•0•0•4•Updated Oct 27, 2023Oct 27, 2023

    • Broadsea

      Public
      Broadsea deploys the full OHDSI technology stack (R methods library & web tools), using cross-platform Docker container technology.
      HTML
      •
      Apache License 2.0
      •74•0•0•0•Updated Jan 18, 2023Jan 18, 2023

    • sf_uploader

      Public
      Python
      •1•0•0•4•Updated Dec 8, 2022Dec 8, 2022

    • WebAPI

      Public
      OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
      Java
      •
      Apache License 2.0
      •179•0•0•0•Updated Feb 4, 2022Feb 4, 2022

    • charts

      Public
      A collection of Helm charts
      Go
      •
      MIT License
      •6•0•0•0•Updated Dec 30, 2021Dec 30, 2021

    • phenotype-features

      Public
      Jupyter Notebook
      •7•1•0•0•Updated Mar 12, 2020Mar 12, 2020

    • Atlas

      Public
      ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
      JavaScript
      •
      Apache License 2.0
      •149•0•0•0•Updated Dec 10, 2019Dec 10, 2019

    • DataQualityDashboard

      Public
      A tool to help improve data quality standards in observational data science.
      JavaScript
      •
      Apache License 2.0
      •107•0•0•0•Updated Nov 26, 2019Nov 26, 2019

    • phenotype-ml

      Public
      Phenotype Working Group, Machine Learning team
      0•0•0•0•Updated May 8, 2019May 8, 2019

    • omop_notebook

      Public
      Replicate some reports from Achilles to characterize synthetic OMOP datasets in BQ
      Jupyter Notebook
      •0•0•0•0•Updated Jan 17, 2018Jan 17, 2018

    • lemur-docker

      Public
      Docker files for the Lemur certificate orchestration tool
      Python
      •88•0•0•0•Updated Nov 30, 2017Nov 30, 2017

    • nih-pmi-data-dictionary

      Public
      REDCap data dictionary for NIH PMI project
      1•0•0•1•Updated Jul 18, 2017Jul 18, 2017

    • Atlas-wiki

      Public
      1•0•0•0•Updated Apr 26, 2016Apr 26, 2016
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