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@esi-neuroscience Ernst Strüngmann Institute (ESI) of the Max Planck Society

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    30 repositories

    • esi-conda

      Public
      Collection of pre-configured conda environments available on the ESI HPC cluster
      condaneuroscienceconda-environment
      condaneuroscienceconda-environment
      Jupyter Notebook
      •0•1•1•0•Updated Mar 31, 2026Mar 31, 2026

    • esi-ntials

      Public
      A collection of tools, configs and code snippets that proved to be useful in various situations.
      Shell
      •0•1•0•0•Updated Mar 18, 2026Mar 18, 2026

    • slurmfun

      Public
      MATLAB tools to submit jobs into SLURM
      hpcmatlabslurm
      hpcmatlabslurmcluster-computing
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•1•0•Updated Mar 10, 2026Mar 10, 2026

    • nixos-workshop-clients

      Public
      This repository will contain the instructions for setting up a bootable nixos, which contains a user account as an auto login. The steps are provided in the REA…
      Nix
      •
      MIT License
      •0•2•0•0•Updated Feb 27, 2026Feb 27, 2026

    • gdpr-quiz

      Public
      A short interactive quiz covering what you really need to know about data protection for human subject research
      privacyquizdata-protection
      privacyquizdata-protectiongpdr
      SCSS
      •0•0•0•0•Updated Feb 16, 2026Feb 16, 2026

    • acme

      Public
      Asynchronous Computing Made ESI
      pythonasynchronousparallel
      pythonasynchronousparallelhigh-performance-computing
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•13•0•0•Updated Nov 19, 2025Nov 19, 2025

    • 2025-10-30-swc

      Public
      Website for SWC Workshop 10/2025
      HTML
      •
      Other
      •0•0•0•0•Updated Sep 15, 2025Sep 15, 2025

    • vscode-remote-hpc

      Public
      Connect VS Code to non-interactive HPC compute nodes managed by SLURM
      Shell
      •15•3•1•0•Updated Aug 12, 2025Aug 12, 2025

    • marimo

      Public
      A reactive notebook for Python — run reproducible experiments, query with SQL, execute as a script, deploy as an app, and version with git. All in a modern, AI-…
      Python
      •
      Apache License 2.0
      •1k•0•0•0•Updated May 27, 2025May 27, 2025

    • syncopy

      Public
      Systems Neuroscience Computing in Python: user-friendly analysis of large-scale electrophysiology data
      analysisneurosciencecomputational-neuroscience
      analysisneurosciencecomputational-neurosciencebrainecogspectral-methodssystems-neuroscience
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •17•55•32•6•Updated Mar 6, 2025Mar 6, 2025

    • acme-demo

      Public
      Demo and Examples showing how to use ACME
      hpcparallel-computinguser-friendly
      hpcparallel-computinguser-friendly
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Nov 1, 2023Nov 1, 2023

    • oephys2nwb

      Public
      Export Open Ephys binary data to NWB 2.0
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•3•2•0•Updated Oct 23, 2023Oct 23, 2023

    • ARCADE

      Public
      ARCADE is a modular suite of Applications for Real-time Control of subject Actions and stimulus Diplay for behavioral Experiments.
      matlab-toolboxexperimental-designresearch-software
      matlab-toolboxexperimental-designresearch-software
      MATLAB
      •
      GNU General Public License v3.0
      •4•4•21•1•Updated Aug 15, 2023Aug 15, 2023

    • esi-syncopy-feedstock

      Public
      A conda-smithy repository for esi-syncopy.
      BSD 3-Clause "New" or "Revised" License
      •3•1•0•0•Updated Jul 28, 2023Jul 28, 2023

    • rear

      Public
      Relax-and-Recover - Linux bare metal disaster recovery and system migration solution (cfr. mksysb, ignite)
      Shell
      •
      GNU General Public License v3.0
      •264•0•0•0•Updated Jun 15, 2023Jun 15, 2023

    • StimServer

      Public
      C++ source code of StimServer for ARCADE (visual stimulation)
      C++
      •
      GNU Lesser General Public License v3.0
      •2•1•4•0•Updated May 11, 2022May 11, 2022

    • DeepLabCut

      Public
      Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals
      Python
      •
      GNU Lesser General Public License v3.0
      •1.8k•0•0•0•Updated Apr 12, 2022Apr 12, 2022

    • esi-acme-feedstock

      Public
      A conda-smithy repository for esi-acme.
      BSD 3-Clause "New" or "Revised" License
      •3•0•0•0•Updated Mar 2, 2022Mar 2, 2022

    • EyeLinkServer

      Public
      C++ source code of EyeLinkServer for ARCADE
      C++
      •
      GNU General Public License v3.0
      •2•1•1•0•Updated Mar 1, 2022Mar 1, 2022

    • NidaqServer

      Public
      C++ source code of NidaqServer for ARCADE (digital I/O)
      C++
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Feb 14, 2022Feb 14, 2022

    • staged-recipes

      Public
      A place to submit conda recipes before they become fully fledged conda-forge feedstocks
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5.9k•0•0•0•Updated Jan 19, 2022Jan 19, 2022

    • afni

      Public
      Official AFNI source and documentation
      C
      •117•0•0•0•Updated Sep 28, 2021Sep 28, 2021

    • ANTs

      Public
      Advanced Normalization Tools (ANTs)
      C++
      •
      Other
      •403•0•0•0•Updated Sep 28, 2021Sep 28, 2021

    • syncopy-matlab

      Public
      MATLAB interface for Syncopy files
      MATLAB
      •
      Other
      •1•1•2•0•Updated Aug 10, 2021Aug 10, 2021

    • ungoogled-chromium

      Public
      Google Chromium, sans integration with Google - PPC64LE FORK
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1.1k•0•0•0•Updated Jun 21, 2021Jun 21, 2021

    • phy

      Public
      phy: interactive visualization and manual spike sorting of large-scale ephys data
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •185•0•0•0•Updated Apr 6, 2021Apr 6, 2021

    • phylib

      Public
      Lightweight electrophysiological data analysis library
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •28•0•0•0•Updated Mar 18, 2021Mar 18, 2021

    • chromium_power

      Public
      Patches that allow Chromium to build and run on ppc64le
      Python
      •
      GNU General Public License v3.0
      •8•0•0•0•Updated Dec 3, 2020Dec 3, 2020

    • PyTables

      Public
      A Python package to manage extremely large amounts of data
      C
      •
      BSD 3-Clause "New" or "Revised" License
      •281•0•0•0•Updated Aug 12, 2020Aug 12, 2020

    • tensorflow

      Public
      Tensorflow modified to run CPU-only on IBM POWER7 BE machines
      C++
      •
      Apache License 2.0
      •75k•0•0•0•Updated Mar 26, 2020Mar 26, 2020
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