Repositories list

• ilayoutx

  Public
  Graph layout algorithms in Rust/Python

  pythonrustlayouts+ 6

  pythonrustlayoutsgraphsnetworkxnetworksigraphumapsugiyama

  Python

  •

  MIT License

  •22 forks•00 stars•00 issues•22 pull requests•Updated Apr 8, 2026Apr 8, 2026

• iplotx

  Public
  Visualise networks and trees in Python, with style.

  visualizationpythongraphs+ 8

  visualizationpythongraphsnetworkxbiopythonnetworksmatplotlibplottingigraphscikit-bio+ 1

  Python

  •

  MIT License

  •33 forks•8686 stars•55 issues•00 pull requests•Updated Apr 8, 2026Apr 8, 2026

• zootermopsis_atlas_paper

  Public
  Single-cell atlas of Zootermopsis nevadensis - code repo for paper

  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 11, 2026Mar 11, 2026

• cell_atlas_approximations_HI

  Public
  Human interface for cell atlas approximations

  JavaScript

  •11 fork•00 stars•44 issues•22 pull requests•Updated Jun 30, 2025Jun 30, 2025

• cell_atlas_approximations_disease_API

  Public
  APIs for atlas approximations on human disease

  Jupyter Notebook

  •11 fork•00 stars•11 issue•00 pull requests•Updated May 23, 2025May 23, 2025

• cell_atlas_approximations_analysis

  Public
  Analysis of cell atlas approximations across organs and organisms.

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 27, 2025Mar 27, 2025

• SATURN-xfer

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 19, 2025Mar 19, 2025

• cell_atlas_approximations_NLP

  Public
  Natural language processor for cell atlas approximations

  JavaScript

  •00 forks•00 stars•44 issues•00 pull requests•Updated Mar 4, 2025Mar 4, 2025

• cell_atlas_approximations

  Public
  This is an umbrella repo describing cell atlas approximations

  00 forks•22 stars•00 issues•00 pull requests•Updated Feb 28, 2025Feb 28, 2025

• cell_atlas_approximations_API

  Public
  APIs for cell atlas approximations

  HTML

  •

  MIT License

  •22 forks•00 stars•77 issues•33 pull requests•Updated Feb 28, 2025Feb 28, 2025

• cell_atlas_approximations_compression

  Public
  Compression for cell atlas approximations

  Python

  •

  MIT License

  •22 forks•00 stars•99 issues•00 pull requests•Updated Feb 17, 2025Feb 17, 2025

• scquill

  Public
  Approximate any single cell data set, saving >99% of memory and runtime.

  Python

  •

  MIT License

  •11 fork•00 stars•22 issues•00 pull requests•Updated Dec 17, 2024Dec 17, 2024

• cell_atlas_approximations_disease_compression

  Public
  Approximation/compression scripts for atlas approximations on human disease

  Python

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Sep 26, 2024Sep 26, 2024

• data-compression-and-APIs-for-cell-atlases

  Public
  Jupyter Notebook

  •11 fork•00 stars•00 issues•00 pull requests•Updated Mar 29, 2023Mar 29, 2023

• apica

  Public
  API for compressed cell atlases

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 29, 2022Nov 29, 2022

• igraph_docs_Adrian

  Public
  11 fork•00 stars•00 issues•00 pull requests•Updated Nov 19, 2022Nov 19, 2022

• treasuremap

  Public
  Treasuremap is a variation of UMAP that embeds a network with some fixed nodes.

  Python

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 17, 2022Nov 17, 2022

• northstar

  Public
  Single cell type annotation guided by cell atlases, with freedom to be queer

  clusteringscrna-seqsinglecell+ 3

  clusteringscrna-seqsinglecellscrna-seq-analysiscell-atlasleidenalg

  Python

  •

  MIT License

  •66 forks•2525 stars•11 issue•00 pull requests•Updated Jul 25, 2022Jul 25, 2022

• northstar_analysis

  Public
  Jupyter notebooks and scripts to perform atlas-based scRNA-seq analysis using Northstar

  Jupyter Notebook

  •22 forks•11 star•00 issues•00 pull requests•Updated May 14, 2020May 14, 2020

• atlas_landmarks

  Public
  Single cell gene expression data, averaged or subsampled by cell type

  Python

  •11 fork•00 stars•11 issue•00 pull requests•Updated Oct 29, 2019Oct 29, 2019