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    26 repositories

    • omnipy

      Public
      Omnipy is a high level Python library for type-driven data wrangling and scalable workflow orchestration (under development)
      metadataworkflowjson
      metadataworkflowjsondataetluniversalorchestrationdata-wranglingfairontologies
      Python
      •
      Apache License 2.0
      •1•26•167•0•Updated Apr 17, 2026Apr 17, 2026

    • fga-wg

      Public
      Main repository for the FAIRification of Genomic Annotations WG in the Research Data Alliance (RDA)
      Python
      •
      MIT License
      •0•1•22•1•Updated Apr 14, 2026Apr 14, 2026

    • prefect-helm

      Public
      Helm charts for deploying Prefect Services
      Smarty
      •
      Apache License 2.0
      •96•0•0•0•Updated Apr 1, 2026Apr 1, 2026

    • omnipy_examples

      Public
      Python
      •
      Apache License 2.0
      •1•0•22•0•Updated Feb 3, 2026Feb 3, 2026

    • biohackathon-2025-project-23

      Public
      Streamlining Metadata for Biodiversity Genome Annotation
      PHP
      •
      MIT License
      •2•0•0•0•Updated Nov 6, 2025Nov 6, 2025

    • omnipy_example_data

      Public
      Creative Commons Zero v1.0 Universal
      •1•0•0•0•Updated Jul 5, 2025Jul 5, 2025

    • biohackathon-2024-project-31

      Public
      Project repo for project 31 of BioHackathon Europe 2024:
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Apr 14, 2025Apr 14, 2025

    • fairtracks.net

      Public
      Repo hosting the FAIRtracks landing page.
      searchmetadataresearch
      searchmetadataresearchgenomicsfairtracksmetadata-standardresearch-datainfrastructure-servicesgenomic-tracks
      Vue
      •
      MIT License
      •1•4•16•0•Updated Jan 16, 2025Jan 16, 2025

    • fairtracks_augment

      Public
      Python
      •
      Apache License 2.0
      •0•0•8•2•Updated Feb 19, 2024Feb 19, 2024

    • helm-charts

      Public
      Helm charts curated by Sigma2 AS
      Mustache
      •
      Apache License 2.0
      •11•0•0•0•Updated Feb 19, 2024Feb 19, 2024

    • galaxy-interactive-client-tool

      Public
      Data intensive science for everyone.
      Python
      •
      Other
      •1.1k•0•0•0•Updated Feb 2, 2024Feb 2, 2024

    • python-tabulate

      Public
      Pretty-print tabular data in Python, a library and a command-line utility. Repository migrated from bitbucket.org/astanin/python-tabulate.
      Python
      •
      MIT License
      •186•0•0•0•Updated Jan 3, 2024Jan 3, 2024

    • fairtracks_standard

      Public
      FAIRtracks is a JSON Schema defining a minimal standard for genomic track metadata.
      Python
      •
      Creative Commons Attribution 4.0 International
      •2•7•23•1•Updated Sep 10, 2023Sep 10, 2023

    • fairtracks_validator

      Public
      FAIRification of Genomic Data Tracks JSON Schema validator
      Java
      •
      GNU Lesser General Public License v2.1
      •0•0•9•2•Updated May 23, 2023May 23, 2023

    • fairtracks_json_to_gsuite

      Public
      REST web service which converts track metadata that follows the FAIRtracks JSON Schema (https://github.com/FAIRtracks) into GSuite format
      Python
      •
      MIT License
      •0•0•1•1•Updated May 1, 2023May 1, 2023

    • biorxiv_chatgpt

      Public
      0•0•0•0•Updated Feb 15, 2023Feb 15, 2023

    • pdocs

      Public
      A simple program and library to auto generate API documentation for Python modules.
      Python
      •
      Other
      •18•0•0•0•Updated Dec 20, 2022Dec 20, 2022

    • sqip-loader

      Public
      Loads images and exports tiny SQIP previews as image/svg+xml URL-encoded data
      JavaScript
      •
      MIT License
      •3•0•0•0•Updated Jun 27, 2022Jun 27, 2022

    • old.fairtracks.github.io

      Public
      Repo hosting the FAIRtracks landing page.
      HTML
      •
      Creative Commons Attribution 4.0 International
      •0•0•10•0•Updated Mar 25, 2022Mar 25, 2022

    • w3id.org

      Public
      Website source code for w3id.org.
      HTML
      •1.6k•0•0•0•Updated Nov 11, 2021Nov 11, 2021

    • fairtracks_validator_python

      Public
      FAIRification of Genomic Data Tracks JSON Schema validator, Python edition
      Python
      •
      GNU Lesser General Public License v2.1
      •0•0•0•0•Updated Oct 8, 2021Oct 8, 2021

    • unifair_encode

      Public
      Apache License 2.0
      •0•0•0•0•Updated May 10, 2021May 10, 2021

    • jsonschema2md

      Public
      Convert Complex JSON Schemas into Markdown Documentation
      JavaScript
      •
      Apache License 2.0
      •149•0•0•0•Updated Jul 6, 2020Jul 6, 2020

    • fairfiller

      Public archive
      Tool that fills 'term_value' based on ontology in the 'term_iri'
      Kotlin
      •
      MIT License
      •0•0•1•0•Updated Nov 1, 2019Nov 1, 2019

    • json-validator

      Public
      :cop: Validate data against a JSON schema
      Perl
      •63•0•0•0•Updated Jul 1, 2019Jul 1, 2019

    • json-schema

      Public
      JSON Schema validator for java, based on the org.json API
      Java
      •
      Other
      •278•0•0•0•Updated May 20, 2019May 20, 2019
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