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    21 repositories

    • HitSV

      Public
      HitSV: Maximizing discovery of structural variants across sequencing technologies
      variants-calling
      variants-calling
      C
      •
      GNU General Public License v3.0
      •1•25•1•0•Updated Apr 9, 2026Apr 9, 2026

    • HitSV_call_results

      Public
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 4, 2026Apr 4, 2026

    • panSVR

      Public
      An NGS SV caller based on pan-genome
      C
      •
      MIT License
      •1•3•1•0•Updated Aug 30, 2024Aug 30, 2024

    • deSAMBA

      Public
      deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches
      C
      •
      MIT License
      •5•12•2•0•Updated May 5, 2024May 5, 2024

    • AnalysisScripts

      Public
      Python
      •
      MIT License
      •2•4•0•0•Updated Sep 26, 2022Sep 26, 2022

    • cuteSV

      Public
      Long read based human genomic structural variation detection with cuteSV
      Python
      •
      MIT License
      •38•2•0•0•Updated Aug 31, 2022Aug 31, 2022

    • TideHunter

      Public
      TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
      tandem-repeatslong-readsmultiple-sequence-alignment
      tandem-repeatslong-readsmultiple-sequence-alignmentnanopore-sequencingpartial-order-alignment
      C
      •
      MIT License
      •0•1•0•0•Updated Oct 21, 2020Oct 21, 2020

    • deSALT

      Public
      deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
      MIT License
      •0•3•0•0•Updated Apr 21, 2020Apr 21, 2020

    • xQTLimp

      Public
      xQTLImp: efficient and accurate xQTL summary statistics imputation
      C++
      •3•3•0•0•Updated Mar 23, 2020Mar 23, 2020

    • rMETL

      Public
      rMETL - realignment-based Mobile Element insertion detection Tool for Long read
      meivariant-callingpacbio-data
      meivariant-callingpacbio-datananopore-sequencing
      Python
      •
      MIT License
      •4•6•0•0•Updated Oct 4, 2019Oct 4, 2019

    • hitbc.github.io

      Public
      CSS
      •1•0•0•0•Updated Apr 26, 2019Apr 26, 2019

    • rCANID

      Public
      read Clustering and Assembliy-based Novel insertion Detection tool
      Python
      •
      MIT License
      •2•2•0•0•Updated Sep 22, 2018Sep 22, 2018

    • deBGA-VARA

      Public
      Fast variation-aware read aligner
      C
      •1•0•0•0•Updated Sep 3, 2018Sep 3, 2018

    • rMFilter

      Public
      Acceleration of long read-based structure variation calling by chimeric read filtering
      C++
      •2•2•0•0•Updated Aug 22, 2018Aug 22, 2018

    • deGSM

      Public
      de Bruijn Graph Constructor in Scalable Memory
      C++
      •3•4•0•0•Updated Jul 30, 2018Jul 30, 2018

    • ubwt

      Public
      ubwt: Uni-path BWT utilities
      C
      •1•0•0•0•Updated Jun 4, 2018Jun 4, 2018

    • LAMSA

      Public
      Long Approximate Matches-based Split Aligner
      C
      •
      MIT License
      •4•13•0•0•Updated Apr 6, 2017Apr 6, 2017

    • deSPI

      Public
      fast classification of metagenomic sequences with lightweight de Bruijin graph-based reference indexing
      C++
      •5•3•0•0•Updated Aug 15, 2016Aug 15, 2016

    • deBGA

      Public
      de Bruijn Graph-based read aligner
      C
      •8•11•0•0•Updated Jul 19, 2016Jul 19, 2016

    • deBWT

      Public
      A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.
      C
      •2•6•0•0•Updated Mar 7, 2016Mar 7, 2016

    • rHAT

      Public
      Alignment tool for noisy long reads
      C++
      •
      MIT License
      •4•0•0•0•Updated Dec 2, 2015Dec 2, 2015
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