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    26 repositories

    • benchbaze

      Public
      Web app for managing lab collections and orders
      Python
      •
      GNU General Public License v3.0
      •0•4•0•15•Updated Apr 13, 2026Apr 13, 2026

    • benchbaze-map-dna-plannotate

      Public
      Webserver and command line tool for annotating engineered plasmids
      Python
      •
      GNU General Public License v3.0
      •31•0•0•0•Updated Apr 13, 2026Apr 13, 2026

    • benchbaze-map-dna-viewer

      Public
      Plasmid viewer for the lab database of the Ulrich Lab @ IMB Mainz
      JavaScript
      •5•0•0•0•Updated Apr 10, 2026Apr 10, 2026

    • benchbaze-map-dna-svg-converter

      Public
      Server-side-rendering for CircularView from Teselagen's Open Vector Editor
      JavaScript
      •1•0•0•0•Updated Apr 2, 2026Apr 2, 2026

    • NGSpipe2go

      Public
      a set of NGS pipelines
      R
      •
      GNU General Public License v3.0
      •10•24•0•0•Updated Mar 10, 2026Mar 10, 2026

    • parkour2

      Public
      Keeping track of sequence data! 👩🏻‍🔬 🧬 👨🏽‍💻
      Python
      •9•0•0•0•Updated Jan 28, 2026Jan 28, 2026

    • fold2go

      Public
      fold2go is a nextflow pipeline for in silico prediction of protein structures and interactions through various machine learning models.
      workflowpipelinenextflow
      workflowpipelinenextflowhpcprotein-structure-predictionboltzalphafold2alphafold-multimeralphafold3
      Python
      •
      MIT License
      •0•3•0•0•Updated Jan 23, 2026Jan 23, 2026

    • dupRadar

      Public
      Assessment of duplication rates in RNA-Seq datasets
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 30, 2025Aug 30, 2025

    • rrvgo

      Public
      Reduce + Visualize GO
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 23, 2024Oct 23, 2024

    • DistancePlotter

      Public
      R
      •1•1•0•0•Updated Sep 17, 2024Sep 17, 2024

    • juicer

      Public
      A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
      Shell
      •
      MIT License
      •194•0•0•0•Updated Aug 14, 2024Aug 14, 2024

    • guide2go

      Public
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Jul 11, 2024Jul 11, 2024

    • dissectBCL

      Public
      demultiplexing pipeline
      Python
      •2•0•0•0•Updated Feb 12, 2024Feb 12, 2024

    • singularity-hpc

      Public
      Local filesystem registry for containers (intended for HPC) using Lmod or Environment Modules. Works for users and admins.
      Python
      •
      Mozilla Public License 2.0
      •29•0•0•0•Updated Mar 3, 2023Mar 3, 2023

    • starrpeaker

      Public
      STARRPeaker: STARR-seq peak caller
      Python
      •
      GNU General Public License v3.0
      •7•0•0•0•Updated Mar 10, 2022Mar 10, 2022

    • liftover

      Public
      R
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Nov 24, 2021Nov 24, 2021

    • toolshed

      Public
      R
      •1•2•0•0•Updated Nov 9, 2020Nov 9, 2020

    • sysops

      Public
      a collection of lmod modules
      Lua
      •0•0•0•0•Updated Sep 9, 2020Sep 9, 2020

    • imbforge.github.io

      Public
      HTML
      •0•0•0•0•Updated Aug 10, 2020Aug 10, 2020

    • bpipe

      Public
      Bpipe - a tool for running and managing bioinformatics pipelines
      Groovy
      •
      Other
      •61•0•0•0•Updated Jul 9, 2019Jul 9, 2019

    • awesome-single-cell

      Public
      List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
      MIT License
      •1.1k•0•0•0•Updated Aug 15, 2017Aug 15, 2017

    • Multiplot

      Public
      create mutliple plots of text files including gating
      R
      •0•1•0•0•Updated Jul 21, 2017Jul 21, 2017

    • 2colorMinimizer

      Public
      Minimize distance in 2 color experiments
      R
      •0•0•0•0•Updated Mar 27, 2017Mar 27, 2017

    • dataMiner

      Public
      Data exploration and visualization
      R
      •2•0•1•0•Updated Nov 15, 2016Nov 15, 2016

    • awesome-containers

      Public
      Creative Commons Zero v1.0 Universal
      •12•0•0•0•Updated Nov 5, 2016Nov 5, 2016

    • encodeChIPqc

      Public
      R
      •2•4•0•0•Updated Mar 15, 2016Mar 15, 2016
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