Repositories list

• petprep

  Public

  nipreps/petprep’s past year of commit activity
  PETPrep: A Robust Preprocessing Pipeline for PET Data

  HTML

  •

  Apache License 2.0

  •1313 forks•2121 stars•2828 issues•1313 pull requests•Updated Apr 23, 2026Apr 23, 2026

• nireports

  Public
  The NiPreps' Reporting and Visualization system - report templates and "reportlets"

  visualizationquality-controlreporting+ 4

  visualizationquality-controlreportingneuroimagingbrain-imagingqcnipreps

  Python

  •

  Apache License 2.0

  •2424 forks•1010 stars•2323 issues•1010 pull requests•Updated Apr 23, 2026Apr 23, 2026

• migas-server

  Public

  nipreps/migas-server’s past year of commit activity
  Python

  •

  Apache License 2.0

  •11 fork•33 stars•44 issues•00 pull requests•Updated Apr 23, 2026Apr 23, 2026

• sdcflows

  Public
  Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes

  magnetic-resonance-imagingecho-planar-imagingnonlinear-distortions+ 1

  magnetic-resonance-imagingecho-planar-imagingnonlinear-distortionsimage-artifacts

  Python

  •

  Apache License 2.0

  •2929 forks•4545 stars•3838 issues•1717 pull requests•Updated Apr 21, 2026Apr 21, 2026

• nibabies

  Public

  nipreps/nibabies’s past year of commit activity
  fMRIPrep Lifespan - A robust, transparent workflow tailored for neonate and infant MRI

  neuroimagingfmriinfant

  neuroimagingfmriinfant

  Python

  •

  Apache License 2.0

  •1515 forks•3939 stars•3636 issues•1212 pull requests•Updated Apr 21, 2026Apr 21, 2026

• niworkflows

  Public

  nipreps/niworkflows’s past year of commit activity
  Common workflows for MRI (anatomical, functional, diffusion, etc)

  Python

  •

  Apache License 2.0

  •5757 forks•109109 stars•8585 issues•1313 pull requests•Updated Apr 21, 2026Apr 21, 2026

• smriprep

  Public
  Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)

  image-processingmrisurface-reconstruction+ 3

  image-processingmrisurface-reconstructionimage-segmentationimage-registrationstructural-mri

  Python

  •

  Apache License 2.0

  •4646 forks•162162 stars•6565 issues•1515 pull requests•Updated Apr 21, 2026Apr 21, 2026

• fmriprep

  Public

  nipreps/fmriprep’s past year of commit activity
  fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensurin…

  image-processingneuroimagingfmri+ 3

  image-processingneuroimagingfmribidsbrain-imagingfmri-preprocessing

  HTML

  •

  Apache License 2.0

  •311311 forks•727727 stars•321321 issues•1616 pull requests•Updated Apr 21, 2026Apr 21, 2026

• migas-py

  Public
  A ready-to-go python package for communicating with a migas server

  Python

  •

  Apache License 2.0

  •22 forks•55 stars•33 issues•00 pull requests•Updated Apr 11, 2026Apr 11, 2026

• niquery

  Public
  A principled tool to query open neuroimaging datasets, extract relevant information and create new datasets for research

  graphqlresearchmri+ 8

  graphqlresearchmripetneuroimagingfmribrain-imagingmagnetic-resonance-imagingpositron-emission-tomographyopenneuro+ 1

  Python

  •

  Apache License 2.0

  •11 fork•00 stars•55 issues•22 pull requests•Updated Apr 8, 2026Apr 8, 2026

• nifreeze

  Public
  A flexible framework for volume-wise artifact estimation and correction across multiple 4D neuroimaging modalities (diffusion MRI, functional MRI, and PET)

  mripetneuroimaging+ 10

  mripetneuroimagingfmripreprocessingdwibrain-imagingmagnetic-resonance-imagingpositron-emission-tomographydmri+ 3

  Python

  •

  Apache License 2.0

  •99 forks•55 stars•3535 issues•1818 pull requests•Updated Apr 8, 2026Apr 8, 2026

• version-schemes

  Public
  setuptools_scm plugin for nipreps version schemes

  versioningsetuptools-scm

  versioningsetuptools-scm

  Python

  •

  Apache License 2.0

  •11 fork•22 stars•11 issue•11 pull request•Updated Apr 8, 2026Apr 8, 2026

• mriqcwebapi

  Public

  nipreps/mriqcwebapi’s past year of commit activity
  Backend of the MRIQC Web API

  Python

  •

  Apache License 2.0

  •1313 forks•77 stars•33 issues•00 pull requests•Updated Apr 7, 2026Apr 7, 2026

• fmripost-template

  Public template

  nipreps/fmripost-template’s past year of commit activity
  A generic fMRIPost workflow

  Python

  •

  Apache License 2.0

  •44 forks•00 stars•66 issues•55 pull requests•Updated Apr 2, 2026Apr 2, 2026

• acres

  Public
  Resource-loading utility for Python

  pythonresources

  pythonresources

  Python

  •

  Apache License 2.0

  •11 fork•00 stars•00 issues•22 pull requests•Updated Apr 1, 2026Apr 1, 2026

• fmripost-aroma

  Public
  Run ICA-AROMA on fMRIPrep derivatives

  fmrifmriprepfmri-preprocessing

  fmrifmriprepfmri-preprocessing

  Python

  •

  Apache License 2.0

  •55 forks•2222 stars•2121 issues•77 pull requests•Updated Apr 1, 2026Apr 1, 2026

• fmripost-resample

  Public

  nipreps/fmripost-resample’s past year of commit activity
  Python

  •

  Apache License 2.0

  •11 fork•00 stars•00 issues•33 pull requests•Updated Apr 1, 2026Apr 1, 2026

• skeleton

  Public
  A generic project skeleton for Python projects.

  Python

  •

  Apache License 2.0

  •3838 forks•11 star•00 issues•00 pull requests•Updated Mar 26, 2026Mar 26, 2026

• nipreps.github.io

  Public

  nipreps/nipreps.github.io’s past year of commit activity
  The NiPreps landing page

  Python

  •

  Creative Commons Zero v1.0 Universal

  •1111 forks•33 stars•1010 issues•22 pull requests•Updated Mar 17, 2026Mar 17, 2026

• presentations

  Public

  nipreps/presentations’s past year of commit activity
  A common resource for talks, courses and presentations

  HTML

  •

  Creative Commons Zero v1.0 Universal

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 17, 2026Mar 17, 2026

• fmripost-phase

  Public

  nipreps/fmripost-phase’s past year of commit activity
  An attempt at an fMRIPost workflow for handling phase data

  fmrifmriprepfmri-preprocessing

  fmrifmriprepfmri-preprocessing

  Python

  •

  Apache License 2.0

  •11 fork•33 stars•1010 issues•55 pull requests•Updated Mar 1, 2026Mar 1, 2026

• fmripost-rapidtide

  Public
  A BIDS App for running rapidtide on a preprocessed fMRI dataset.

  fmrifmriprepfmri-preprocessing

  fmrifmriprepfmri-preprocessing

  Python

  •

  Apache License 2.0

  •11 fork•44 stars•1313 issues•55 pull requests•Updated Mar 1, 2026Mar 1, 2026

• fmripost-tedana

  Public
  A BIDS App for the tedana workflow

  Python

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  MIT License

  •55 forks•33 stars•1111 issues•33 pull requests•Updated Mar 1, 2026Mar 1, 2026

• fmriprep-rodents

  Public

  nipreps/fmriprep-rodents’s past year of commit activity
  fMRIPrep for Rodents

  HTML

  •

  Apache License 2.0

  •77 forks•1313 stars•1111 issues•22 pull requests•Updated Feb 17, 2026Feb 17, 2026

• dmriprep

  Public
  dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensurin…

  preprocessingbidsdiffusion-mri+ 2

  preprocessingbidsdiffusion-mrimagnetic-resonance-imagingbids-apps

  Python

  •

  Apache License 2.0

  •2525 forks•7373 stars•2020 issues•44 pull requests•Updated Feb 14, 2026Feb 14, 2026

• mriqc

  Public

  nipreps/mriqc’s past year of commit activity
  Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

  machine-learningquality-controlmri+ 2

  machine-learningquality-controlmriquality-reporterneuroimaging

  Python

  •

  Apache License 2.0

  •138138 forks•352352 stars•8282 issues•99 pull requests•Updated Jan 28, 2026Jan 28, 2026

• fmriprep_stats

  Public
  Automatic reports summarizing usage stats from Sentry.io

  Jupyter Notebook

  •

  Apache License 2.0

  •11 fork•55 stars•00 issues•00 pull requests•Updated Jan 26, 2026Jan 26, 2026

• identity

  Public

  nipreps/identity’s past year of commit activity
  A repository of NiPreps identity files

  Python

  •

  Creative Commons Zero v1.0 Universal

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 3, 2026Jan 3, 2026

• NORDIC_Raw

  Public

  nipreps/NORDIC_Raw’s past year of commit activity
  Matlab code for performing image reconstruction in MRI and performing the NORDIC denoising

  MATLAB

  •

  Other

  •2828 forks•00 stars•00 issues•00 pull requests•Updated Dec 18, 2025Dec 18, 2025

• nipreps-book

  Public
  Dockerfile

  •

  Apache License 2.0

  •77 forks•88 stars•00 issues•00 pull requests•Updated Nov 24, 2025Nov 24, 2025