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@urppeia URPP Evolution in Action: From Genomes to Ecosystems

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    35 repositories

    • methylator-galaxy

      Public
      Galaxy related code for Methylator
      Dockerfile
      •0•0•3•0•Updated Oct 26, 2025Oct 26, 2025

    • meth1001_athaliana

      Public
      Deepak's code for data analysis
      HTML
      •0•0•1•0•Updated Jul 24, 2025Jul 24, 2025

    • shannonR

      Public
      R package for performing JSD analysis
      R
      •
      Other
      •0•0•0•0•Updated Jul 18, 2025Jul 18, 2025

    • docker_bio_609_610

      Public
      Docker image for courses BIO609, BIO610, and BIO634 at University of Zurich
      Dockerfile
      •1•1•3•0•Updated Jun 30, 2025Jun 30, 2025

    • urppeia

      Public
      0•0•0•0•Updated Apr 7, 2025Apr 7, 2025

    • teachingDocker

      Public
      Docker teaching material from @grexor
      Dockerfile
      •2•0•0•0•Updated Mar 7, 2025Mar 7, 2025

    • bio634

      Public
      Dockerfile and course material for course BIO634
      Dockerfile
      •0•0•0•0•Updated Dec 9, 2024Dec 9, 2024

    • galaxy

      Public
      Data intensive science for everyone.
      Python
      •
      Other
      •1.1k•0•0•0•Updated Dec 9, 2024Dec 9, 2024

    • DNAme_shiny

      Public
      HTML
      •1•0•0•0•Updated Nov 7, 2024Nov 7, 2024

    • 3DsRAM-seq-poster

      Public
      HTML
      •0•0•0•0•Updated Nov 6, 2024Nov 6, 2024

    • Poster_shannon

      Public
      HTML
      •0•0•0•0•Updated Sep 24, 2024Sep 24, 2024

    • Shannon_app_old_version

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Aug 20, 2024Aug 20, 2024

    • shannon_py_methylation_analysis

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jul 4, 2024Jul 4, 2024

    • publication_figs

      Public
      0•0•0•0•Updated Feb 8, 2024Feb 8, 2024

    • bio609_2023

      Public
      BIO609 presentation and course evaluation
      1•0•0•0•Updated Nov 9, 2023Nov 9, 2023

    • poster_urpp_conference

      Public
      Jonas Bucher poster for URPP conference 2023
      HTML
      •1•0•0•0•Updated Jun 9, 2023Jun 9, 2023

    • gg_group3

      Public
      Git & GitHub tutorial Group 3
      1•0•0•0•Updated Feb 10, 2023Feb 10, 2023

    • gg_group6

      Public
      Git & GitHub tutorial Group 6
      0•0•0•0•Updated Feb 10, 2023Feb 10, 2023

    • gg_group5

      Public
      Git & GitHub tutorial Group 5
      0•0•0•0•Updated Feb 10, 2023Feb 10, 2023

    • gg_group4

      Public
      Git & GitHub tutorial Group 4
      0•0•0•0•Updated Feb 10, 2023Feb 10, 2023

    • gg_group2

      Public
      Git & GitHub tutorial Group 2
      0•0•0•0•Updated Feb 10, 2023Feb 10, 2023

    • gg_group1

      Public
      Git & GitHub tutorial Group 1
      0•0•0•0•Updated Feb 10, 2023Feb 10, 2023

    • bio609_2022

      Public
      BIO609 presentation and course evaluation
      0•0•0•0•Updated Nov 1, 2022Nov 1, 2022

    • BIO634_2021

      Public
      BIO634 teaching material from @carlalbc and @grexor
      1•0•0•0•Updated Jun 4, 2021Jun 4, 2021

    • bio609

      Public
      bio609 teaching material from @grexor
      1•0•0•0•Updated Apr 20, 2021Apr 20, 2021

    • BIO609_2021

      Public
      bio609 teaching material from @carlalbc
      1•0•0•0•Updated Apr 19, 2021Apr 19, 2021

    • BIO634_NGS2_2018

      Public
      BIO634 Next-Generation Sequencing 2 – Transcriptomes, Variant Calling and Biological Interpretation
      Shell
      •2•0•0•0•Updated Sep 21, 2018Sep 21, 2018

    • BIO609_2018

      Public
      GNU General Public License v3.0
      •5•0•0•0•Updated May 19, 2018May 19, 2018

    • R_Tutorial

      Public
      URPP Tutorial on R
      2•0•0•0•Updated Dec 7, 2017Dec 7, 2017

    • BIO609_2017

      Public
      BIO609 Introduction to UNIX/Linux and Bash Scripting
      GNU General Public License v3.0
      •2•0•0•0•Updated Oct 19, 2017Oct 19, 2017
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