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    11 repositories

    • analytical-enrichment-test

      Public
      Analytical neighborhood enrichment test
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Aug 26, 2025Aug 26, 2025

    • Points2Regions

      Public
      Simple tool for clustering spatial points with categorical labels.
      Jupyter Notebook
      •
      MIT License
      •3•8•1•0•Updated Jul 29, 2024Jul 29, 2024

    • is3g

      Public
      In Situ Sequencing Segmentation
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•2•1•Updated Jul 2, 2024Jul 2, 2024

    • napari-points2regions

      Public
      A napari plugin for Points2Regions
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 26, 2024Jan 26, 2024

    • ISS_Decoding_colab

      Public
      In Situ Sequencing decoding compatible with Google Colab
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Sep 6, 2023Sep 6, 2023

    • spage2vec_heart

      Public
      spage2vec, developmental human heart, in situ sequensing
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•0•Updated May 29, 2022May 29, 2022

    • spage2vec

      Public
      spatial-data-analysisgraphsagein-situ-hybridization
      spatial-data-analysisgraphsagein-situ-hybridizationin-situ-sequencing
      Jupyter Notebook
      •
      Apache License 2.0
      •4•13•1•0•Updated Jul 1, 2021Jul 1, 2021

    • ML-celltype-neighbor

      Public
      Our workflow for our paper "“Machine learningfor cell classification and neighborhood analysis in glioma tissue"
      Python
      •
      GNU General Public License v3.0
      •1•3•0•0•Updated Apr 30, 2021Apr 30, 2021

    • InSilicoTFM

      Public
      🧫 Framework for predicting cellular traction forces with Deep Learning. 🤖
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Feb 19, 2021Feb 19, 2021

    • graph-iss

      Public
      Graph-based Decoding for In Situ Sequencing
      Jupyter Notebook
      •
      Apache License 2.0
      •4•10•0•0•Updated Jul 2, 2020Jul 2, 2020

    • TMA-studies

      Public
      JavaScript
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Jun 15, 2020Jun 15, 2020
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