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Pull requests: scikit-bio/scikit-bio

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Pull requests list

ENH: Add jplace edge ID support to newick format
#2452 opened Apr 14, 2026 by wasade Collaborator Loading…
3 of 4 tasks
1
[WIP] Implement RPCA
#2449 opened Apr 13, 2026 by aj-pinto Contributor Loading…
2 of 4 tasks
1
ENH: Improving MMvec interface, documentation and algorithm.
#2448 opened Apr 13, 2026 by qiyunzhu Contributor Loading…
2 of 4 tasks
1
Fix: Prevent infinite loops and array cycles during NNI swapping on unary roots
#2447 opened Apr 11, 2026 by AshutoshSingh9 Loading…
3 tasks done
1
6
ENH: Make permdisp internals Array API-compatible
#2445 opened Apr 5, 2026 by r0hansaxena Contributor Loading…
2 of 4 tasks
1
3
ENH: Move permdisp group computations from Pandas to NumPy
#2443 opened Apr 3, 2026 by r0hansaxena Contributor Loading…
2 of 4 tasks
10
ENH: Add Array API support to core alpha diversity metrics
#2437 opened Mar 30, 2026 by r0hansaxena Contributor Loading…
2 of 4 tasks
1
ENH: Add Array API support to center_distance_matrix
#2436 opened Mar 28, 2026 by LarytheLord Loading…
1
ENH: Add ORF detection and expose start/stop codons in GeneticCode
#2434 opened Mar 24, 2026 by r0hansaxena Contributor Loading…
3 of 4 tasks
1
1
ENH: support int8/int16/int32 dtypes with fixed-point scale in distance matrices
#2432 opened Mar 23, 2026 by r0hansaxena Contributor Loading…
3 of 4 tasks
1
17
Fix permdisp mac ci
#2431 opened Mar 21, 2026 by Sriniketh99 Loading…
2 of 4 tasks
1
ENH: Add Array API support to centralize and vlr
#2429 opened Mar 19, 2026 by LarytheLord Loading…
6
Fix IO registry AttributeError at program exit
#2428 opened Mar 18, 2026 by r0hansaxena Contributor Loading…
3 of 4 tasks
1
1
PERF: lazy-load requests and h5py to reduce import time by ~37%
#2427 opened Mar 18, 2026 by MAUK9086 Loading…
3 tasks done
5
BUG: Fix multi_replace output type for Pandas 3.0 apply compatibility
#2425 opened Mar 18, 2026 by MAUK9086 Loading…
4 tasks done
2
MNT: Support Array API in Correspondence Analysis (CA)
#2422 opened Mar 16, 2026 by Sriniketh99 Loading…
2 of 4 tasks
1
ENH: add general _reader_kwargs mechanism for read() docstrings
#2421 opened Mar 15, 2026 by LiudengZhang Loading…
4 tasks done
1
1
ENH: Refactor alpha diversity module for Array API compatibility
#2416 opened Mar 11, 2026 by Sriniketh99 Loading…
2 of 3 tasks
23
perf(stats/distance): parallelize geomedian_axis_one inner loops with prange
#2415 opened Mar 10, 2026 by AhmedKhairy22 Contributor Loading…
2 of 4 tasks
2
Support sparse matrices in vectorize_counts_and_tree
#2414 opened Mar 10, 2026 by r0hansaxena Contributor Loading…
3 of 4 tasks
1
4
ENH: Support translation of degenerate sequences
#2411 opened Mar 8, 2026 by r0hansaxena Contributor Loading…
3 of 4 tasks
1
1
parallelizing dirmult_lme
#2409 opened Mar 7, 2026 by Aaraviitkgp Loading…
1 of 4 tasks
19
xp implementation for dirmult_ttest and dirmult_lme
#2407 opened Mar 6, 2026 by Aaraviitkgp Loading…
1 of 4 tasks
25
ENH: Support Array API in ANCOM
#2405 opened Mar 5, 2026 by Sriniketh99 Loading…
2 tasks done
16
(WIP) Enhancing performance of the balanced minimum evolution (BME) algorithm
#2404 opened Mar 4, 2026 by qiyunzhu Contributor Loading…
2 of 4 tasks
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