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src/search_options.hpp
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| setMinValue(parser, "e-value", "0"); | ||
| setMaxValue(parser, "e-value", "100"); | ||
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| addOption(parser, ArgParseOption(" ", "bit-score", |
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This needs to be an empty string
1 and 2 are identical, 1 filtered for bitscore 60 is identical to 3 (one query, 10Mb with uniref) |
This is different to Lambda3, is that because otherwise it would be difficult to merge with Lambda2's code? |
Yes, I would have had to change more code, and I wanted to keep all changes to lambda2 minimal. |
We don't have tests on this branch, but I have done some local tests that all look fine.
To use a minimum bit-score and no e-value, add
--e-value 100 --bit-score 42.@sarahet Can you run the following on a uniref DB and one small query file (maybe just 5 or 10MB):
The output of 1) and 2) should be identical. When filtering 1) for bitscore 60, the output should be very similar to 3 (ideally identical).
(This doesn't have to be on our benchmark server)