What's Changed

• Use new sequana-wrappers.shells by @cokelaer in #36

Full Changelog: v1.4.0...v1.5.0

What's Changed

• Fix genomecov and support long reads by @cokelaer in #34

Full Changelog: v1.3.0...v1.4.0

What's Changed

• Major update with freebayes and bwa split by @cokelaer in #32
• fix CI by @cokelaer in #33

Full Changelog: v1.2.0...v1.3.0

What's Changed

• Add missing resources section in snpeff rule by @khourhin in #24
• add minimap2 by @cokelaer in #25

Full Changelog: v1.1.2...v1.2.0

Fix regression joint calling

What's Changed

• Fix coverage (regression) and add a test by @cokelaer in #22

Full Changelog: v1.1.0...v1.1.1

What's Changed

• Set sequana_coverage to False by default (to follow docstring) by @khourhin in #18
• Update to use latest sequana_pipetools (click) by @cokelaer in #19
• update CI pypi by @cokelaer in #20
• Fix wrapper tag and --from-project minimal call by @cokelaer in #21

New Contributors

• @khourhin made their first contribution in #18

Full Changelog: v1.02...v1.1.0

What's Changed

• Fix multiqc, add genomecov by @cokelaer in #17

Full Changelog: v1.0.1...v1.02

What's Changed

• automatically set the index algorithm by @cokelaer in #15

Full Changelog: v1.0.0...v1.0.1

What's Changed

• Update CI by @cokelaer in #12
• Use latest apptainers for graphviz and fix snpeff by @cokelaer in #13

Full Changelog: v0.12.0...v1.0.0