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sophiamjiali/README.md

Sophia Mengjia Li, MSc (Candidate), HBSc

I am a first year candidate in the Master of Science in Applied Computing (MScAC) program under the Artificial Intelligence in Healthcare focus at the University of Toronto.

I graduated with high distinction from the University of Toronto, receiving an Honours Bachelor of Science (HBsc) in Bioinformatics & Computational Biology (Specialist) and Computer Science (Major) with a cumulative GPA of 3.9/4.0. I was a Dean's List Scholar for each eligible year and received the B. Arthur Bensley Scholarship in Life Sciences from the Department of Cell & Systems Biology.

Research Interests

My research interests largely revolve around multi-modal biomedical data integration and medical imaging, particularly in developing methodological frameworks for complex, high-dimensional data. I am broadly interested in deep learning and generative approaches in Computer Science, especially as they apply to translational biomedicine.

Current Work

  • MethylTrain: a Python package for DNA methylation data engineering for machine learning
  • MethylVAE: generative modeling of tumour histology from differential methylation
  • WS-IMC Workflows: toolkit for computational analysis of whole-slide imaging mass cytometry data
  • UofThrifts: second-hand marketplace for University of Toronto students

Contact Me

Pinned Loading

  1. MethylVAE MethylVAE Public

    Generative Modeling of Tumour Histology from Differential Methylation

    Jupyter Notebook 1

  2. MethylTrain MethylTrain Public

    A Python package for DNA methylation data engineering for machine learning workflows

    Jupyter Notebook

  3. ws-imc-workflows ws-imc-workflows Public

    Toolkit for computational analysis of whole-slide imaging mass cytometry (WS-IMC) data

    Jupyter Notebook

  4. BioTokenizeR BioTokenizeR Public

    An R package for biology-aware sequence tokenization using variable-length BPE

    R 1

  5. aml-integrated-omics-pipeline aml-integrated-omics-pipeline Public

    An R-based pipeline for integrated differential analysis of DNA methylation and RNA-seq data in acute myeloid leukemia (AML)

    R