Suite of tools for use in genome assembly and consensus. Work in progress.
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Mar 22, 2021 - Go
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genome-mapping
Here are 8 public repositories matching this topic...
Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
bioinformatics pipeline genomics bioinformatics-pipeline fasta smalt structurevariation genomes-comparison genome-mapping genome-alignment pav-sequences
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Mar 5, 2018 - C
A library of functions with the goal of mapping nucleotide-containing FASTA files for protein encoding ORFs as well as a computational analytics research paper on said functions
python genome proteins protein data-analysis fasta orfs genome-analysis orf genome-mapping sars covid-19 covid covid19 sars-cov-2 covid19-data protein-encoding proteinblast
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Mar 25, 2022 - Jupyter Notebook
A Snakemake-based pipeline for processing and quality-controlling ancient DNA data, including contamination assessment and comparative genomic analysis across time points, producing damage-rescaled, mapped reads ready for downstream analyses.
bioinformatics snakemake pipeline genomics genome bioinformatics-pipeline multiqc fasta bam fastq adna dna-sequencing genome-mapping ancientdna ancient-dna short-reads raw-reads ancient-dna-analysis short-read-mapping
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Apr 2, 2026 - Python
This repository provides a comprehensive module on graphical pangenomics, guiding users through building, indexing, mapping, and visualizing pangenome graphs. The module runs on Google Cloud Platform using Jupyter notebooks and includes tools like PGGB, vg, BLAST, and Bandage.
bioinformatics gcp computational-biology population-genomics variant-calling high-throughput-sequencing genome-analysis genome-assembly illumina-sequencing read-mapping pangenomics genome-mapping pangenome-graph
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Jun 6, 2025 - HTML
Docker to run BWA for aligning sequences against a reference genome
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Mar 6, 2018
Implement and compare 2 pattern matching algorithms for genome mapping, one using suffix array and the other using Burrows-Wheeler Transform
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Dec 22, 2020 - Python
Genomic Analysis of Canis lupus with the use of Genomic Maps and Philogenetic Trees
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Jun 30, 2023
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