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Added tutorial on comparing branch and SNP-based PCA using msprime and tskit, including code examples for simulating ARGs and performing PCA.
Updated R package installation command to specify CRAN repository.
Updated kernel specifications and code formatting for clarity. Added comments and organized code cells for better readability.
Updated Jupyter Notebook metadata and improved PCA tutorial content.
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OK, have figured it out. format_name in the md file has to be |
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Hi,
here is my proposed PCA tutorial. This covers:
Looking forward to opinions/comments/requests!
HELP please: for some reason the cell outputs of this tutorial don't render when I run
makeon my system (but they do for all other existing python tutorials). What I might be going on? I had written this as an ipynb and then converted to md.Cheers,
Hannes