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Potential incorrect output

bugGenuine bugGenuine bug

Status: Open.

#443 In vcflib/vcflib;

· outpaddling opened on Apr 4, 2026

vcfwave only annotates nested variants after vg call — how to annotate all variants?

help wanted

Status: Open.

#428 In vcflib/vcflib;

· HuangYihang1222 opened on Apr 28, 2025

vcfwave and gVCF question

help wanted

Status: Open.

#412 In vcflib/vcflib;

· bunop opened on Jan 28, 2025

vfcwave is not handling inversions

bugGenuine bugGenuine bug

discussion

help wanted

not-resolved

Status: Open.

#372 In vcflib/vcflib;

· pjotrp opened on Mar 24, 2023

support for .csi of vcf indexes

enhancement

help wanted

Status: Open.

#367 In vcflib/vcflib;

· maxineliu opened on Dec 16, 2022

Possible over strict testing in vcflib

bugGenuine bugGenuine bug

help wanted

Status: Open.

#365 In vcflib/vcflib;

· PeteClapham opened on Oct 27, 2022

·  

Later

vcfwave add allele counts at sample level

enhancement

help wanted

Status: Open.

#360 In vcflib/vcflib;

· jpuritz opened on Jul 22, 2022

·  

Later

hetcount ignores ALT-only sites (such as 1/2)

documentationDocumentation missing or wrongDocumentation missing or wrong

enhancement

help wanted

Status: Open.

#313 In vcflib/vcflib;

· janxkoci opened on Feb 28, 2021

QUAL gets changed from unknown (.) to zero.

help wanted

Status: Open.

#291 In vcflib/vcflib;

· al-dunstan opened on Jun 25, 2020

vcfhethomratio does not accept stdin as input

enhancement

help wanted

Status: Open.

#261 In vcflib/vcflib;

· janxkoci opened on Sep 15, 2019

vcffilter doesn't like >= or <=

bugGenuine bugGenuine bug

help wanted

Status: Open.

#195 In vcflib/vcflib;

· calkan opened on May 5, 2017

Incorrect labelling of transversions in vcfclassify

bugGenuine bugGenuine bug

help wanted

Status: Open.

#171 In vcflib/vcflib;

· smottarella opened on Dec 27, 2016