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Sorghum Marker Dashboard

Public collaborator review app for the sorghum 100K marker panel curation.

Open the GitHub Pages site:

https://warelab.github.io/sorghum-marker-dashboard/

What collaborators can do

  • Review collaborator marker counts and trait coverage.
  • Search and filter curated markers by source, trait, chromosome, priority, standard ID, and original marker name.
  • Review marker-level details and standardized marker IDs.
  • Add browser-local feedback for individual markers.
  • Export sorghum_marker_feedback.csv and send it back to the project team.

Feedback workflow

  1. Enter reviewer name and group in the feedback panel.
  2. Filter/search the curated catalog.
  3. Click Review on any marker row.
  4. Choose a decision and add a comment.
  5. Click Save feedback.
  6. Click Export feedback CSV and return the exported CSV.

Feedback is saved only in the reviewer browser until exported. This app has no backend database and does not automatically transmit feedback.

Files

  • index.html - app shell
  • styles.css - dashboard styles
  • app.js - filtering, table, export, and feedback behavior
  • data.js - generated marker dashboard data
  • normalized_marker_catalog.tsv - canonical ID mapping for curated markers
  • marker_nomenclature.md - standard marker naming rules

Updating the dashboard

The source curation lives in the private/project repository. Regenerate the dashboard bundle there, then copy the static files into this public repo.

Minimum files to update:

index.html
styles.css
app.js
data.js
normalized_marker_catalog.tsv
marker_nomenclature.md
.nojekyll

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