Search results

converting .gff repeatmasker to .txt format

Status: Open.

#106 In wyang17/SQuIRE;

· mars188 opened on Oct 29, 2025

Docker support?

Status: Open.

#105 In wyang17/SQuIRE;

· hukai916 opened on Dec 6, 2024

A bug in Count function

Status: Open.

#104 In wyang17/SQuIRE;

· panktigosar opened on Oct 8, 2024

ATACseq

Status: Open.

#103 In wyang17/SQuIRE;

· ealemon opened on Aug 26, 2024

bioconductor-deseq2 1.16.1 but there are no viable options

Status: Open.

#102 In wyang17/SQuIRE;

· sahuno opened on Aug 17, 2024

Sorting mistake?

Status: Open.

#101 In wyang17/SQuIRE;

· messagian opened on Jun 23, 2024

Expectation Maximization on TE counting

Status: Open.

#100 In wyang17/SQuIRE;

· AresRASP opened on May 17, 2024

Using SQuIRE with non-model organism

Status: Open.

#99 In wyang17/SQuIRE;

· mdondrup opened on Feb 23, 2024

Unable to Install SQuIRE

Status: Open.

#98 In wyang17/SQuIRE;

· frentzeperis opened on Nov 2, 2023

Antisense transcription quantification

Status: Open.

#97 In wyang17/SQuIRE;

· ngualand opened on Oct 2, 2023

support Nanopore direct RNA sequencing data ?

Status: Open.

#96 In wyang17/SQuIRE;

· baishengjun opened on Sep 28, 2023

FPKM counts are more than Tot_counts in Squire Count output.

Status: Open.

#95 In wyang17/SQuIRE;

· Surar opened on Sep 21, 2023