Allen Institute for Neural Dynamics
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aind-ephys-pipeline
aind-ephys-pipeline PublicAIND pipeline for processing extracellular electrophysiology data
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aind-data-schema
aind-data-schema PublicA library that defines AIND data schema and validates JSON.
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openscope-community-predictive-processing
openscope-community-predictive-processing PublicThis repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.
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aind-ephys-spikesort-kilosort25-full
aind-ephys-spikesort-kilosort25-full PublicCodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
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supervoxel-loss
supervoxel-loss PublicEfficient connectivity-preserving loss function for training neural networks to perform instance segmentation.
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ibl-ephys-alignment-gui
ibl-ephys-alignment-gui PublicForked from int-brain-lab/iblapps
Tool for aligning electrophysiological features to anatomical landmarks
Repositories
- aind-beh-ephys-analysis Public
AllenNeuralDynamics/aind-beh-ephys-analysis’s past year of commit activity - package-brain-atlas-assets Public
Reorganize various brain atlas data assets into a standard organization and metadata convention.
AllenNeuralDynamics/package-brain-atlas-assets’s past year of commit activity - hcr-integrated-qc-capsule Public
Performs integrated quality control for a complete HCR experiment by combining ROI shape metrics, pairwise unmixing outputs, and cell typing results into a single QC output. Unlike round-specific processing steps, this capsule evaluates the full multi-round dataset togethe.
AllenNeuralDynamics/hcr-integrated-qc-capsule’s past year of commit activity - AutoTomeQC Public
Automates sectioning quality control for the Prototome/Pylasso. Analyzes block face images to grade cuts (Go/No-Go/Unsure) based on knife marks, splits, thickness, etc.
AllenNeuralDynamics/AutoTomeQC’s past year of commit activity