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Commits on Oct 29, 2019

• updated prep_*.sh files to include prepDE.py

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• fixed -e bug for unstranded alignments; fixed TPM -nan

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Commits on Oct 14, 2019

• prepDE change default directory behavior ( "." instead of "ballgown"), added -e -G checks, -v

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Commits on Sep 23, 2019

• properly revert to default GffExon copy operator

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• Merge branch 'master' of github.com:gpertea/stringtie

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• fixed GffExon::operator=

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Commits on Sep 8, 2019

• added thread sanitizer target to Makefile

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• changed pthreads linking approach

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• traverse_dfs() proper fix (hopefully), v2.0.3

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Commits on Sep 5, 2019

• Update README.md

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• bumped version to 2.0.2b

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  committed
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• minor fix for rare crash in v2.0.2

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Commits on Sep 4, 2019

• force downloading of test_data.tar.gz

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• fixed bug in 2.0.1

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• fixed bug in 2.0.1

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Commits on Aug 30, 2019

• memcheck passed, fixed small memory leak

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Commits on Aug 29, 2019

• merged 2.0.1 update

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  committed
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• Merge branch 'update_2.0.1' of github.com:gpertea/stringtie into update_2.0.1

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• updates for v2.0.1

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• updates for v2.0.1

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Commits on Jul 30, 2019

• use test_data branch as a more stable way to get the test data

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• reset version to 2.0, remove ltmain.sh symlink

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• added test_data/README.md

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• Make branch v2 overriding master

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• sync mpertea/stringtie2 changes

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Commits on Jul 20, 2019

• sync mpertea/stringtie2 changes

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Commits on Jul 19, 2019

• switching to MIT License

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• switching to MIT License

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• added testing routine to v2

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• reverted precision to float for tpm and fpkm output

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Commits on Jul 16, 2019

• addressing non-standard C++ issue signaled by #226

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Commits on May 20, 2019

• sync with mpertea repo

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• partial merge/update to v1 master changes

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Commits on May 17, 2019

• minor fix (currgroup set to lastgroup)

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• fixed some leaks and dbzs

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