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Commits on Mar 4, 2022

• another take at preventing hanging terminal introns

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Commits on Mar 3, 2022

• ignoring terminal hanging introns, addressing issue #356

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Commits on Jan 28, 2022

• note about a desired jcov metric in print_predcluster()

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Commits on Jan 26, 2022

• remove test data override

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• revert previous cov<1 check to only apply when !eonly

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Commits on Jan 25, 2022

• ver bump to 2.2.1, test output included in distribution

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• fixed bug that forced a hardcoded >=1 coverage output threshold

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Commits on Jan 10, 2022

• addressing PTF loading bug reported in #347

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Commits on Dec 4, 2021

• Update create_rna_sr.py

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• version bump to 2.2.0

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Commits on Nov 6, 2021

• Merge pull request #264 from ljyanesm/patch-1

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• Merge pull request #342 from yollct/pydefaultdict

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• Update README.md

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Commits on Nov 5, 2021

• Update README.md

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• prevent curl failures

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• prevent curl SSL cert problem

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• merging htslib branch

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• merging htslib

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• tests added

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• run_tests_valgrind should use existing test_data

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• mix tests added

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• Update README.md

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• Update README.md

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• Update README.md

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Commits on Nov 4, 2021

• Update README.md

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• adjusting usage text

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Commits on Nov 3, 2021

• version bump prep

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• patched GSamReader::next() memory leak

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Commits on Oct 25, 2021

• mix-merge sync: improve transcriptome assembly on mixed data w/ annotation, small exon correction

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Commits on Oct 18, 2021

• use defaultdict instead of dict

  

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Commits on Sep 16, 2021

• nt

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• fixed CRAM fidelity issue, --ref/cram-ref option added

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Commits on Sep 15, 2021

• debugging inconsistent output vs samtools pipe

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Commits on Jul 6, 2021

• prep scripts update

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• updating prep scripts

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