Fixes to DC geometry (JeffersonLab#299)

* account for the fact the R3 reference wire is ministaggered

* accounting for the wire feedthroughs in DC geometry

* account for tilt

* account for tilt

* account for tilt

* moved feedthrough parameters to CCDB, code cleanups

* removed unnecessary code

* more cleanups and comments

* introduced yaml variables to turn on/off ministagger and feedthrough fixes gor compatibility with old alignment

* bug fix

* another bug fix

* making R3 Geant4 volumes independent from ministagger

* Changed ministagger status enum name to more meaningful set

* version bump

* added printouts and comments

* added comments and printouts as per review bullets 1, 2, and 3

* added comments addressing review points 5,6,8, and 9

* few more comments improvement

* added examples of usage of new dc geometry variables to yaml files

* version bump

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Co-authored-by: Christopher Dilks <[email protected]>
Co-authored-by: Nathan Baltzell <[email protected]>

added RG-D network per request of the run group

clara-io package added to 6.5.6.2

Merge pull request JeffersonLab#629 from JeffersonLab/development

Merge to master for production release

Merge pull request JeffersonLab#625 from JeffersonLab/development

Merge for production tag

version bump

Merge pull request JeffersonLab#599 from JeffersonLab/development

Go to master for new production release

Merge pull request JeffersonLab#567 from JeffersonLab/development

Merging to master for new production release

version bump

Merge pull request JeffersonLab#563 from JeffersonLab/6b.5.9

bump version