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Pull requests: NCATSTranslator/Babel

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Pull requests list

Add near-end-to-end tests for write_compendium() label selection
#726 opened Apr 18, 2026 by gaurav Collaborator • Draft
Restrict label demotion to chemicals only
#725 opened Apr 18, 2026 by gaurav Collaborator • Draft
Improve BabelTest fields in issue templates
#724 opened Apr 17, 2026 by gaurav Collaborator • Draft
Bump pytest from 9.0.2 to 9.0.3 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#709 opened Apr 14, 2026 by dependabot bot Loading…
Export concords as Parquet files
#704 opened Apr 2, 2026 by gaurav Collaborator • Draft
Reduce peak RSS of cross-compendium DuckDB checks via two-pass queries
#703 opened Mar 30, 2026 by gaurav Collaborator Loading…
4
Bump pygments from 2.19.2 to 2.20.0 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#702 opened Mar 30, 2026 by dependabot bot Loading…
Add conflation taxon report
#697 opened Mar 17, 2026 by gaurav Collaborator • Draft
1
Add identifier partitioning tests for shared identifiers
#692 opened Mar 12, 2026 by gaurav Collaborator Loading…
2 tasks
11
Bump tornado from 6.5.4 to 6.5.5 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#691 opened Mar 12, 2026 by dependabot bot Loading…
Add pipeline tests for UMLS
#690 opened Mar 9, 2026 by gaurav Collaborator Loading…
1 task
3
Eliminate MeSH proteins from chemicals
#687 opened Mar 8, 2026 by gaurav Collaborator • Draft
1 task
5
Add UMLS report generator
#683 opened Mar 5, 2026 by gaurav Collaborator • Draft
6
Add generic SQL report system for drop-in .sql report files
#671 opened Feb 24, 2026 by gaurav Collaborator • Draft
1 task
10
Exclude UMLS/MeSH chemical identifiers when preparing proteins
#670 opened Feb 23, 2026 by gaurav Collaborator • Draft
Add contributors
#615 opened Nov 7, 2025 by gaurav Collaborator • Draft
Improve Biolink type reporting
#589 opened Sep 25, 2025 by gaurav Collaborator • Draft
3 tasks
Feat/use rust for datacollect
#588 opened Sep 25, 2025 by gaurav Collaborator • Draft
1
Fix chembl issue 584
#585 opened Sep 23, 2025 by gaurav Collaborator • Draft
1
Bulk normalize
#564 opened Sep 9, 2025 by gaurav Collaborator • Draft
Add CLI normalizer
#503 opened Aug 28, 2025 by gaurav Collaborator • Draft
Moved UMLSToBiolinkTypeConverter into umls.py
#445 opened May 19, 2025 by gaurav Collaborator • Draft
Added a basic SSSOM to Concord converter
#439 opened May 1, 2025 by gaurav Collaborator • Draft
Add a comparator script
#381 opened Dec 16, 2024 by gaurav Collaborator Loading…
1
Adding SSSOM export
#328 opened Aug 4, 2024 by gaurav Collaborator • Draft
1
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