Added features / functionality:

• Added RSV model
• Added ABM parameter study
• Support for IO functionality with single age group for ODE SECIR
• Enabled vaccination data output for NUTS1 and NUTS2 stratifications in Germany
• Extended automatic differentiation (AD) to support to the SECIRVVS model
• Added read_graph to python bindings
• Added Python interface for SDE SIR type models
• Added Geographic location to all of MEmilio

General changes:

• Added return value policy to TimeSeries in python bindings
• Deleted simulation folder after porting to https://github.com/SciCompMod/memilio-simulations/
• When calling print_table from python, the output is now direclty printed in the console per default.
• Added copy constructable simulation for ODE models (changed handling of IntegratorCore)
• Changed python CI to build wheels without SDist
• Changed install requirements for readthedocs to build in two steps
• Added default options and a builder to CLI
• Introduced a naming scheme for concepts
• Added normalization of exposure rate for ABM
• Adjusted epidata code to new NUTS3 file structure
• Updated IDE-SECIR examples and improved documentation

Corrections:

• Fixed the initialization of recovered in ODE SECIR
• Improved consistency of floating-point types
• Fixed potential use of wrong dt_max in ControlledStepperWrapper
• Fixed missing SMM update of internal waiting time at the end of advance
• Fixed file leak in test_mobility_io
• Fixed incorrect overload detection and type mismatch in test_commuters
• Added missing members to ABM serialization

Minor changes:

• Allow threshold for code coverage
• Updated citations
• Extended documentation

Merged pull requests

• Add return_value_policy by @MaxBetzDLR in #1344
• 1324 Direclty print output from print_table in python by @HenrZu in #1325
• 1288 Delete simulation folder by @HenrZu in #1323
• 1348 Fix initialization recovered ode secir by @HenrZu in #1353
• 1356 Allow threshold for code coverage by @HenrZu in #1357
• 1321 copy constructable simulation by @MaxBetzDLR in #1345
• 1361 python CI: Build wheels without SDist by @reneSchm in #1360
• 1315 support IO functionality with single age group for ODE SECIR by @HenrZu in #1354
• Install requirements for readthedocs build in two steps by @HenrZu in #1362
• 1363-add-output-of-germany-vaccination-data by @MaxBetzDLR in #1364
• 1018 use floating point types consistently by @julianlitz in #1307
• 1365 Potential use of wrong dt_max in ControlledStepperWrapper by @reneSchm in #1366
• Update citation for newest release by @HenrZu in #1367
• 1350 Implement RSV model by @HenrZu in #1352
• 1379 Add read_graph to python bindings by @HenrZu in #1380
• 1337-extend-the-documentation by @kilianvolmer in #1338
• 1379 Add default options and a builder to CLI by @reneSchm in #1377
• SMM Update internal waiting time at the end of advance by @jubicker in #1397
• Fix file leak in test_mobility_io by @reneSchm in #1401
• 1382 Fix incorrect overload detection and type mismatch in test_commuters by @julianlitz in #1394
• 1351 pymio interface for sde sir type models by @MaxBetzDLR in #1371
• 1274 normalizing of exposure rate by @DavidKerkmann in #1322
• Fix Readthedocs build by @HenrZu in #1403
• 1404 Adjust epidata code to new nuts3 file structure by @HenrZu in #1405
• 1342 make geographic location available to all of MEmilio by @kilianvolmer in #1346
• 1392 update IDE-SECIR examples and improve some documentation by @annawendler in #1402
• Add missing members to ABM serialization by @reneSchm in #1408
• 1407 Introduce a naming scheme for concepts by @reneSchm in #1412
• 468 ABM parameter study by @reneSchm in #1395

New Contributors

• @julianlitz made his first contribution in #1307

Full Changelog: v2.1.0...v2.2.0