South Green Bioinformatics platform
Public repository of code for bioinformatics applications developed in the South Green Bioinformatics platform
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- Montpellier
- http://www.southgreen.fr/
- @green_bioinfo
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Showing 10 of 54 repositories
- VcfHunter Public
VcfExplorer regroups several programs which principal aims are to map DNA and RNAseq data onto reference genome sequence, perform variant calling, manipulate vcf files, perform chromosome painting of accessions based on the contribution of ancestral groups, select marker for genetic map analysis and perform pairwise chromosome linkage of ordered…
SouthGreenPlatform/VcfHunter’s past year of commit activity - Gigwa2 Public
SouthGreenPlatform/Gigwa2’s past year of commit activity - trainings Public
The South Green platform has conducted a series of training courses for several years and this github repository gives access to all trainings (https://southgreenplatform.github.io/trainings/).
SouthGreenPlatform/trainings’s past year of commit activity - PanExplorer_workflow Public
Snakemake worklow for bacterial pan-genome analysis. It can be run in the back-end of PanExplorer web application
SouthGreenPlatform/PanExplorer_workflow’s past year of commit activity - agrold-new-frontend Public
SouthGreenPlatform/agrold-new-frontend’s past year of commit activity
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