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Pull requests: biopython/biopython

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Pull requests list

Fix UnboundLocalError in calculate_consensus with zero counts
#5181 opened Mar 26, 2026 by ernestprovo23 Loading…
3 tasks done
1
1
Replace sys.argv CLI with argparse subcommands in PDBList
#5180 opened Mar 26, 2026 by ernestprovo23 Loading…
3 tasks done
1
1
Extend PDBList obsolete handling to mmCIF, XML and assemblies (#3988)
#5177 opened Mar 14, 2026 by Abdeltoto Loading…
1
Add AFDBList class for PDBList-like AlphaFold downloads (#3990)
#5176 opened Mar 14, 2026 by Abdeltoto Loading…
1
1
Replace assert with explicit if/raise in production code (#3600)
#5175 opened Mar 14, 2026 by Abdeltoto Loading…
1
3
GenBank parsing - handle misplaced BASE COUNT line
#5173 opened Mar 3, 2026 by manulera Loading…
1
1
PDBList: move obsolete files across formats and assemblies
#5170 opened Feb 26, 2026 by LarytheLord Loading…
1
9
fix: Deprecate query_letters and database_letters attributes
#5168 opened Feb 24, 2026 by A404coder Loading…
3 tasks done
1
10
Refactor PDBList CLI to use argparse while preserving legacy behavior
#5167 opened Feb 21, 2026 by MANICHELLURII Loading…
6
Fix argument type passed to get_spherical_coordinates
#5166 opened Feb 20, 2026 by Augustin-Zidek Loading…
2 tasks done
3
Pdbparser thread safety
#5158 opened Feb 8, 2026 by kirandharmar867-maker Loading…
1
2
Fix PDBList URL construction for non-RCSB Mirrors
#5157 opened Feb 4, 2026 by kirandharmar867-maker Loading…
1
6
Feat: Add NetworkX adapter for PDB NeighborSearch results
#5155 opened Jan 25, 2026 by dipankatanu Loading…
4
Add timeout support to NCBIWWW.qblast
#5152 opened Jan 25, 2026 by dipankatanu Loading…
2
Fix residue depth subprocess : Modernize process execution in ResidueDepth using subprocess.run
#5150 opened Jan 25, 2026 by dipankatanu Loading…
1
bwl1289/fix/5137/undefined-symbols
#5141 opened Jan 13, 2026 by BwL1289 Loading…
3 tasks done
1
1
Added depreciation error to MMTFParser.get_structure_from_url since RCSB no longer serves MMTF
#5129 opened Jan 2, 2026 by piecole Loading…
3 tasks done
@JoaoRodrigues
1
make sure that polar_angle is initialized even if the radius is zero,…
#5127 opened Dec 26, 2025 by mdehoon Loading…
3 tasks done
2
Add editable install warning
#5124 opened Dec 23, 2025 by ACA103 Loading…
6
Improve performance of MMCIFParser
#5121 opened Dec 17, 2025 by ozan Loading…
3 tasks done
6
chore: add type annotation to Bio/File.py
#5088 opened Oct 24, 2025 by szabgab Loading…
3 tasks done
5
Add type annotations
#5087 opened Oct 24, 2025 by szabgab Loading…
12
Complete C acceleration for melting temperature calculations
#5085 opened Oct 15, 2025 by rhowardstone Loading…
8 tasks done
15
Add __next__ method to FastaTwoLineIterator
#5078 opened Oct 13, 2025 by vihaankulkarni29 Loading…
3
Add support for terminal_columns in Alignment formatting, issue 5035
#5070 opened Sep 19, 2025 by data2code Loading…
1 task
1
30
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