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Commits on Oct 6, 2023

• fixed out of bounds error for sparsely covered guides

  mpertea

  committed
  baed39e

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Commits on Jun 13, 2022

• fix #348 . Adds mutex to manage concurrent writing to covered reference transcript file

  gsatas

  committed
  6753cd5

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Commits on Mar 3, 2022

• ignoring terminal hanging introns, addressing issue #356

  gpertea

  committed
  996f585

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Commits on Jan 25, 2022

• ver bump to 2.2.1, test output included in distribution

  gpertea

  committed
  5a069c2

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• fixed bug that forced a hardcoded >=1 coverage output threshold

  gpertea

  committed
  dec4ceb

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Commits on Jan 10, 2022

• addressing PTF loading bug reported in #347

  gpertea

  committed
  b498cdd

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Commits on Dec 4, 2021

• version bump to 2.2.0

  gpertea

  committed
  2d2c512

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Commits on Nov 5, 2021

• merging htslib

  gpertea

  committed
  81e38d0

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Commits on Jun 25, 2021

• fixed bug in fwd_to_sink_fast_long and back_to_source_fast_long deleting nodes from pathpat

  gpertea

  committed
  33a2076

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Commits on Jun 19, 2021

• --merge works, transition to htslib completed

  gpertea

  committed
  f687aa2

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Commits on Jun 17, 2021

• build ok, needs testing

  gpertea

  committed
  2729a86

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Commits on Jun 14, 2021

• fixed --mix bug

  gpertea

  committed
  90fb546

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Commits on Jun 4, 2021

• merged mix-merge branch

  gpertea

  committed
  823e948

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Commits on May 28, 2021

• reverted intron+deletion fix

  gpertea

  committed
  872e0cb

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• v2.1.5b

  gpertea

  committed
  df591fd

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Commits on Apr 18, 2021

• modified stringtie to see tiebrush YC tag

  

  Mihaela Pertea

  committed
  921c706

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Commits on Mar 9, 2021

• exiting transfrag fix

  

  Mihaela Pertea

  committed
  0f3f7d1

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Commits on Mar 7, 2021

• cds work in progress, load_cds_param done

  

  Mihaela Pertea

  committed
  074664f

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Commits on Mar 5, 2021

• v2.1.5 fix: adjust coverage estimation for long reads

  gpertea

  committed
  f33b7c3

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Commits on Feb 19, 2021

• switching to new gclib GHashMap

  gpertea

  committed
  c18d37b

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Commits on Jan 2, 2021

• mix mode branch created

  gpertea

  committed
  466ee73

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Commits on Aug 25, 2020

• shorten sleep duration while waiting for threads

  gpertea

  committed
  bd2cd4b

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• builds with mingw64/msys

  gpertea

  committed
  d6dabc4

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Commits on Aug 23, 2020

• builds and passes tests with new GHashMap.hh

  gpertea

  committed
  f0d78fe

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Commits on Jul 6, 2020

• fixed infinte loop for eonly case, and updated to 2.1.4

  

  Mihaela Pertea

  committed
  97b110b

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Commits on May 30, 2020

• minor GVec adjustments

  gpertea

  committed
  b44ee90

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Commits on May 16, 2020

• patch version

  gpertea

  committed
  490ef38

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Commits on May 13, 2020

• Merge branch 'master' of github.com:gpertea/stringtie

  

  Mihaela Pertea

  committed
  16ec4cb

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• fixed option -E

  

  Mihaela Pertea

  committed
  b0bfa81

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Commits on May 12, 2020

• fixed --viral description typo

  gpertea

  committed
  ea53e25

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• fixed --viral description typo

  gpertea

  committed
  68f7675

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• minor usage message reformatting

  gpertea

  committed
  8f43fad

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• fixed eonly for longreads; viral option; several other bug fixes

  

  Mihaela Pertea

  committed
  dca40e4

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Commits on Apr 27, 2020

• fix ref order bug for multiple BAM input files

  gpertea

  committed
  c352594

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Commits on Apr 26, 2020

• added brec->uval as file index when multiple BAMs are given

  gpertea

  committed
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