pipeline for mapping fastq files with bwa in parallel on a grid engine using arrays

this was used for

Capistrano-Gossmann, G. G., Ries, D., Holtgräwe, D., Minoche, A., Kraft, T., Frerichmann, S. L. M., … Kopisch-Obuch, F. J. (2017). Crop wild relative populations of Beta vulgaris allow direct mapping of agronomically important genes. Nature Communications, 8, 15708. https://doi.org/10.1038/ncomms15708 Ries, D., Holtgräwe, D., Viehöver, P., & Weisshaar, B. (2016). Rapid gene identification in sugar beet using deep sequencing of DNA from phenotypic pools selected from breeding panels. BMC Genomics, 17(1), 236. https://doi.org/10.1186/s12864-016-2566-9

This is not actively maintained at the moment