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Commits on Dec 13, 2019

• possible fix for the multi-threading problem?

  gpertea

  committed
  ad4a455

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Commits on Dec 12, 2019

• clearing the bundle should be fully thread protected?

  gpertea

  committed
  df40812

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Commits on Nov 30, 2019

• version bump to 2.0.5

  gpertea

  committed
  dca6cd4

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Commits on Nov 5, 2019

• added -S as alternative to --rseq

  gpertea

  committed
  3b8055b

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Commits on Nov 4, 2019

• added --rseq/--refseq to load genome sequence data for each bundle

  gpertea

  committed
  7372a1e

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Commits on Oct 29, 2019

• fixed -e bug for unstranded alignments; fixed TPM -nan

  gpertea

  committed
  7b1a4f4

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Commits on Sep 8, 2019

• traverse_dfs() proper fix (hopefully), v2.0.3

  gpertea

  committed
  376dce4

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Commits on Sep 5, 2019

• bumped version to 2.0.2b

  gpertea

  committed
  bf4f2ee

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Commits on Sep 4, 2019

• fixed bug in 2.0.1

  gpertea

  committed
  0fcf657

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Commits on Aug 29, 2019

• merged 2.0.1 update

  gpertea

  committed
  3b95d9d

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• updates for v2.0.1

  gpertea

  committed
  4d2f75b

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Commits on Jul 30, 2019

• reset version to 2.0, remove ltmain.sh symlink

  gpertea

  committed
  19001f7

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• sync mpertea/stringtie2 changes

  gpertea

  committed
  b6f0268

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Commits on Jul 19, 2019

• reverted precision to float for tpm and fpkm output

  gpertea

  committed
  f1a7f85

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Commits on May 20, 2019

• partial merge/update to v1 master changes

  gpertea

  committed
  de7519f

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Commits on May 15, 2019

• testing pre-release

  gpertea

  committed
  b724404

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Commits on Mar 20, 2019

• attempt to fix a float precision bug in TPM/FPKM calculation

  gpertea

  committed
  a655733

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Commits on Feb 1, 2019

• update from ~mpertea/ST2

  gpertea

  committed
  5633026

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Commits on Oct 1, 2018

• StringTie 2.0 alpha source

  gpertea

  committed
  abf2dee

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Commits on Sep 4, 2018

• basic XS inference for ref-overlapping alns

  gpertea

  committed
  ba97372

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Commits on Aug 29, 2018

• set default -M back to 1.0; version bumped to 1.3.5

  gpertea

  committed
  23c46b7

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Commits on Jul 19, 2018

• added clipL, clipR soft-clipping values to GBamRecord

  gpertea

  committed
  af51240

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Commits on Jul 13, 2018

• more MacOS gdb fixes

  gpertea

  committed
  7b27c4a

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Commits on Feb 20, 2018

• adjusted Makefile; more -v logging info per bundle

  gpertea

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  a736bd7

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Commits on Feb 15, 2018

• new version tag due to horrible GStr bug

  gpertea

  committed
  2584c14

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Commits on Feb 2, 2018

• bump version to 1.3.4beta due to more GFF parsing changes

  gpertea

  committed
  173f0a7

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• a few more minor performance tweaks

  gpertea

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  7578030

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• more GTF/GFF parsing fixes and workarounds

  gpertea

  committed
  b3c5cc7

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Commits on Dec 14, 2017

• removed unused function

  gpertea

  committed
  eea2f54

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• a couple of comments added about the consumer-producer model employed

  gpertea

  committed
  616e0ec

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Commits on Oct 26, 2017

• more stringent recognition of transcripts (only exon-based entities are loaded)

  gpertea

  committed
  ecd2e7d

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Commits on Mar 27, 2017

• patch release v1.3.3b

  gpertea

  committed
  fd69cb6

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Commits on Feb 15, 2017

• v1.3.3: fixed TPM and coverage calculation for -G

  gpertea

  committed
  ea8c948

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Commits on Jan 29, 2017

• v1.3.1d: fixed too permissive GFF parsing bug in gclib

  gpertea

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  ba1566b

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Commits on Jan 27, 2017

• fixed dumb crash in GTF parsing

  gpertea

  committed
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