Version 3.0: implemented Rfam template search (rfam option) and G-quadruplex pattern recognition (g4 option), see README and demo.ipynb.

chemical probing data is now processed as by the other commonly used tools

Version 2.0

version 1.05 [09.07.2024]
introduced built-in configs, see README
implemented SQUARNA as a Python function
added demo.ipynb

version 1.01 [02.04.2024] - adjusted for very large inputs in the single-sequence mode:
handle fasta/default input formats on the fly, not storing them;
added byseq parameter for parallelizing over input sequences;
added fastest.conf for fast crude predictions;
see the usage example #6.

SQUARNA - an RNA secondary structure prediction method based on a greedy stem formation model
version 1.0c, dated 23.03.2024.

SQUARNA - an RNA secondary structure prediction method based on a greedy stem formation model
version 1.0, dated 26.02.2024.

SQUARNA - an RNA secondary structure prediction method based on a greedy stem formation model
version 0.9, dated 28.08.2023.