Genemede API and Tools

This repository contains code to run the GENEMEDE GAT server that takes API requests.

1. Download this repository via github git clone https://github.com/genemede/gnmd-gat
2. Setup a python virtual environment

cd gnmd-gat
python -m venv env
source env/bin/activate  |  env\Scripts\activate.bat `(if on windows)`
pip install -r requirements.txt

1. Create a .env file on the project root or copy .env.example to .env
2. Set ALLOW_NUKER=1 and ALLOW_FAKER=1 on the .env file
3. Create fake data by running python util.py faker
4. Start the GAT server python serve.py
5. The tool should serve requests at http://127.0.0.1:5342/v0/search?q=a&mtype=researcher for example.

There are several utility scripts available on util.py, you can run python util.py without any arguments to see a list of utilities available.