Replacing ij.text.TextPanel with java.io.FileWriter - #3

Improving headless mode - 3D Analyzer - #3 - avoid ProgressDialog

Avoid ProgressDialog entirely in noGUIs (headless) macro mode.

handling empty macro options

Correct Macro recording - MotiQ Thresholder - issue #3

Correct macro instruction

Update config file information

IntegrateSkeletonPluginsIntoMotiQ2D

Solves compatibility issues of MotiQ with other versions of the plugins
Skeletonize3D and AnalyzeSkeleton than those required for MotiQ, when
these other versions were installed in parallel into the FIJI or ImageJ
working distribution.
Solution: The plugins skeletonize and analyze skeleton required for
MotiQ are now integrated into MotiQ and called locally.

MotiQ3D-OutputFilePath-LengthReduction

To decrease the length of output directory paths, the automatically
generated filenames of output files in the created results folder was
reduced to a minimum prefix ("M3D").
Additionally, the thickness of scale bars in 3D output images was
unified for all three dimensions.

BugfixUseAlternateReferenceImage

Bugfix for processing without checking "use alternate reference image".

bugfixResultsLegend