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Commits on Aug 29, 2019

• merged 2.0.1 update

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• updates for v2.0.1

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Commits on Jul 30, 2019

• reset version to 2.0, remove ltmain.sh symlink

  gpertea

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• sync mpertea/stringtie2 changes

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Commits on Jul 19, 2019

• reverted precision to float for tpm and fpkm output

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Commits on May 20, 2019

• partial merge/update to v1 master changes

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Commits on May 15, 2019

• testing pre-release

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Commits on Mar 20, 2019

• attempt to fix a float precision bug in TPM/FPKM calculation

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Commits on Feb 1, 2019

• update from ~mpertea/ST2

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Commits on Oct 1, 2018

• StringTie 2.0 alpha source

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Commits on Sep 4, 2018

• basic XS inference for ref-overlapping alns

  gpertea

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Commits on Aug 29, 2018

• set default -M back to 1.0; version bumped to 1.3.5

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Commits on Jul 19, 2018

• added clipL, clipR soft-clipping values to GBamRecord

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Commits on Jul 13, 2018

• more MacOS gdb fixes

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Commits on Feb 20, 2018

• adjusted Makefile; more -v logging info per bundle

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Commits on Feb 15, 2018

• new version tag due to horrible GStr bug

  gpertea

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Commits on Feb 2, 2018

• bump version to 1.3.4beta due to more GFF parsing changes

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• a few more minor performance tweaks

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• more GTF/GFF parsing fixes and workarounds

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Commits on Dec 14, 2017

• removed unused function

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• a couple of comments added about the consumer-producer model employed

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Commits on Oct 26, 2017

• more stringent recognition of transcripts (only exon-based entities are loaded)

  gpertea

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Commits on Mar 27, 2017

• patch release v1.3.3b

  gpertea

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Commits on Feb 15, 2017

• v1.3.3: fixed TPM and coverage calculation for -G

  gpertea

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Commits on Jan 29, 2017

• v1.3.1d: fixed too permissive GFF parsing bug in gclib

  gpertea

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Commits on Jan 27, 2017

• fixed dumb crash in GTF parsing

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Commits on Jan 24, 2017

• fixed ordering comparator bug which caused a crash in some situations

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Commits on Jan 18, 2017

• turn off GFF debug

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Commits on Jan 17, 2017

• WIP: adjust GTF parsing

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Commits on Dec 23, 2016

• added stranded library options; fixed one base exon crash; fixed duplicate printing of transcripts

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Commits on Nov 22, 2016

• re-fix of samtools aux tag parsing bug using htslib code

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Commits on Nov 16, 2016

• finally found the GBitVec error cause, fixed

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Commits on Nov 15, 2016

• bug fix for an index out of range error in v1.3.1

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Commits on Nov 12, 2016

• final v1.3.1

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• v1.3.1 fixes:

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