Repositories list

• automation

  Public
  用于自动生成WDL

  Java

  •11 fork•00 stars•00 issues•22 pull requests•Updated Jul 12, 2025Jul 12, 2025

• SOAPgaea

  Public
  sparkhadoopvariant-calling+ 2

  sparkhadoopvariant-callinghadoop-mapreducebioinfo

  Java

  •

  GNU General Public License v3.0

  •99 forks•44 stars•44 issues•44 pull requests•Updated Jul 12, 2025Jul 12, 2025

• DPGT

  Public
  DPGT is a distributed population genetics analysis tool which enabled joint calling on millions of WGS(whole genome sequencing) samples.

  Java

  •

  GNU General Public License v3.0

  •11 fork•88 stars•00 issues•00 pull requests•Updated Feb 24, 2025Feb 24, 2025

• cromwell

  Public
  Workflow Execution Engine using WDL

  Scala

  •

  BSD 3-Clause "New" or "Revised" License

  •381381 forks•00 stars•00 issues•11 pull request•Updated Aug 21, 2024Aug 21, 2024

• SOAPnuke

  Public
  A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files

  C++

  •

  GNU General Public License v3.0

  •2929 forks•114114 stars•1212 issues•33 pull requests•Updated Mar 28, 2024Mar 28, 2024

• SOAPMetaS

  Public
  Java

  •

  GNU General Public License v3.0

  •11 fork•88 stars•00 issues•33 pull requests•Updated Apr 21, 2023Apr 21, 2023

• SOAPTyping

  Public
  HLA typing for Sanger Based Test

  sbthlahla-typing+ 1

  sbthlahla-typingsanger-sequencing

  C++

  •

  GNU General Public License v3.0

  •88 forks•2020 stars•44 issues•00 pull requests•Updated Apr 7, 2023Apr 7, 2023

• bamqc

  Public
  BGI-lowpass bam quality control

  Java

  •00 forks•22 stars•00 issues•00 pull requests•Updated Aug 11, 2021Aug 11, 2021

• vcf-pl-merge

  Public
  lowpass 合并bcftools和gatk结果

  C

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 4, 2021Jan 4, 2021

• vcfstats

  Public
  BGI-lowpass imputation vcf stats

  Java

  •11 fork•33 stars•00 issues•00 pull requests•Updated Dec 1, 2020Dec 1, 2020

• composer

  Public
  Visual and code editor for Common Workflow Language

  TypeScript

  •

  Apache License 2.0

  •7272 forks•11 star•55 issues•00 pull requests•Updated Oct 16, 2019Oct 16, 2019

• SOAPGaeaJointcalling

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Aug 13, 2019Aug 13, 2019

• workflow-examples

  Public
  cromwell workflow examples

  WDL

  •00 forks•11 star•00 issues•00 pull requests•Updated Nov 13, 2018Nov 13, 2018

• gaealib

  Public
  Java

  •11 fork•00 stars•00 issues•00 pull requests•Updated Nov 12, 2018Nov 12, 2018

• bwa-streaming

  Public
  support hadoop streaming

  C

  •

  GNU General Public License v3.0

  •11 fork•22 stars•11 issue•00 pull requests•Updated May 24, 2018May 24, 2018

• GaeaPipeline

  Public archive
  A pipeline for rapid genome analysis and interpretation

  Python

  •11 fork•00 stars•44 issues•00 pull requests•Updated May 27, 2017May 27, 2017

• PVFD

  Public archive
  Population variation frequency database.It's a sub-project of HVBase.

  CSS

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 13, 2017Feb 13, 2017