Skip to content
Change the repository type filter

All

    Repositories list

    • lcpan

      Public
      Variation Graph Construction using Locally Consistent Parsing
      C
      BSD 3-Clause "New" or "Revised" License
      1101Updated Apr 12, 2026Apr 12, 2026
    • lcptools

      Public
      Implementation of LCP in C
      C++
      BSD 3-Clause "New" or "Revised" License
      3200Updated Apr 11, 2026Apr 11, 2026
    • Alkan Lab website
      SCSS
      8200Updated Apr 8, 2026Apr 8, 2026
    • KENT

      Public
      Fast Pathogen Screening with NVIDIA Jetson Cluster in Resource-Constrained Areas
      C++
      GNU General Public License v3.0
      0000Updated Mar 25, 2026Mar 25, 2026
    • FUSOR

      Public
      C++
      BSD 3-Clause "New" or "Revised" License
      0000Updated Mar 19, 2026Mar 19, 2026
    • strive

      Public
      Characterization of structural variation through assembly-to-assembly comparison
      C++
      0100Updated Mar 18, 2026Mar 18, 2026
    • Python
      1000Updated Feb 20, 2026Feb 20, 2026
    • CS481/583 Course Web Page
      CSS
      BSD 2-Clause "Simplified" License
      0200Updated Jan 28, 2026Jan 28, 2026
    • Shell
      0000Updated Jan 5, 2026Jan 5, 2026
    • gencore

      Public
      GenCore utilizes the innovative Locally Consistent Parsing (LCP) algorithm for precise genomic comparisons, supporting .fastq and .fasta files. Implemented in C…
      C
      BSD 3-Clause "New" or "Revised" License
      0200Updated Nov 20, 2025Nov 20, 2025
    • Pre-Alignment Filtering for Short Read Mapping in GPU
      C
      1300Updated Jun 27, 2024Jun 27, 2024
    • saber

      Public
      Pattern matching tool to detect block rearrangement events in genomic sequences
      C++
      0100Updated Feb 14, 2024Feb 14, 2024
    • Linden

      Public
      C++
      1000Updated Oct 15, 2023Oct 15, 2023
    • tardis

      Public
      Toolkit for automated and rapid discovery of structural variants
      C
      BSD 2-Clause "Simplified" License
      62430Updated Aug 24, 2023Aug 24, 2023
    • brifin

      Public
      Python
      BSD 2-Clause "Simplified" License
      0100Updated Jan 2, 2023Jan 2, 2023
    • valor

      Public
      variation discovery using long range information in linked-reads
      C
      BSD 3-Clause "New" or "Revised" License
      21550Updated Oct 5, 2021Oct 5, 2021
    • mrcanavar

      Public
      micro-read Copy Number Variant Regions finder
      C
      BSD 3-Clause "New" or "Revised" License
      21000Updated Feb 24, 2021Feb 24, 2021
    • 0000Updated Nov 3, 2020Nov 3, 2020
    • mam

      Public
      Multiple alignment Manipulator
      C
      BSD 3-Clause "New" or "Revised" License
      1000Updated Apr 15, 2020Apr 15, 2020
    • mrfast

      Public
      micro-read Fast Alignment Search Tool
      C
      Other
      41911Updated Jul 19, 2019Jul 19, 2019
    • Prebuilt SONIC files for different genomes.
      BSD 3-Clause "New" or "Revised" License
      0100Updated Jul 18, 2019Jul 18, 2019
    • GateKeeper: Fast Alignment Filter for DNA Short Read Mapping
      VHDL
      GNU General Public License v3.0
      92100Updated Mar 5, 2019Mar 5, 2019
    • lava

      Public
      C++
      BSD 3-Clause "New" or "Revised" License
      1010Updated Aug 16, 2018Aug 16, 2018
    • hercules

      Public
      Profile HMM-based hybrid error correction algorithm for long reads
      C++
      BSD 3-Clause "New" or "Revised" License
      42160Updated Aug 15, 2018Aug 15, 2018
    • repeatnet

      Public
      RepeatNet: an ab initio centromeric sequence detection algorithm
      C
      BSD 3-Clause "New" or "Revised" License
      0100Updated Aug 4, 2017Aug 4, 2017
    • sirfast

      Public
      C
      BSD 3-Clause "New" or "Revised" License
      1000Updated Aug 4, 2017Aug 4, 2017
    • drfast

      Public
      dibase-read Fast Alignment Search Tool
      C
      BSD 3-Clause "New" or "Revised" License
      0000Updated Aug 4, 2017Aug 4, 2017
    • MAGNET

      Public
      MAGNET: Understanding and Improving the Accuracy of Genome Pre-Alignment Filtering
      MATLAB
      BSD 3-Clause "New" or "Revised" License
      1400Updated Aug 4, 2017Aug 4, 2017
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.