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    11 repositories

    • cptools2

      Public
      Running cellprofiler on eddie3 / SGE clusters
      pythonbiologysge
      pythonbiologysgecellprofilerimaging-informaticshpc-cluster
      Python
      •
      MIT License
      •5•5•0•4•Updated Mar 30, 2026Mar 30, 2026

    • scissorhands

      Public
      Generate eddie3 submission scripts in python
      pythonsgecluster-computing
      pythonsgecluster-computing
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 24, 2025Oct 24, 2025

    • parserix

      Public
      parse metadata from ImageXpress paths
      laboratorymicroscopy
      laboratorymicroscopy
      Python
      •0•0•0•0•Updated Oct 24, 2025Oct 24, 2025

    • sc_morph_tracking

      Public
      The script for article "Single-cell morphological tracking of cell states to identify small-molecule modulators of liver differentiation".
      R
      •0•0•0•0•Updated Aug 16, 2024Aug 16, 2024

    • phenonaut

      Public
      A tool for exploration of multiomic phenotypic space
      Python
      •
      Apache License 2.0
      •2•9•0•0•Updated Aug 5, 2024Aug 5, 2024

    • install_cellprofiler

      Public
      Documentation and scripts to install CellProfiler on eddie3
      cellprofiler
      cellprofiler
      Shell
      •1•0•0•0•Updated Apr 28, 2022Apr 28, 2022

    • meld

      Public
      Collect distributed cellprofiler results into sqlite databases.
      databasecellprofiler
      databasecellprofiler
      Python
      •1•0•4•0•Updated Nov 24, 2021Nov 24, 2021

    • 2018-08_transfer_ML_between_cell_lines

      Public
      Python
      •1•3•1•0•Updated Nov 8, 2018Nov 8, 2018

    • cpchecker

      Public
      Check for failed cellprofiler jobs on eddie3
      Python
      •0•0•0•0•Updated Oct 3, 2018Oct 3, 2018

    • CellProfiler

      Public
      An open-source application for biological image analysis
      Python
      •
      Other
      •419•0•0•0•Updated Sep 24, 2018Sep 24, 2018

    • ImageXpressR

      Public
      R package for extracting metadata from ImageXpress file paths
      R
      •
      Other
      •0•0•0•0•Updated Aug 3, 2017Aug 3, 2017
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