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    11 repositories

    • cryoSENSE

      Public
      (CVPR 2026) Compressive Sensing Enables High-throughput Microscopy with Sparse and Generative Priors (Diffusion Model) on the Protein Cryo-EM Image Manifold
      structural-biologyinverse-problemsdct
      structural-biologyinverse-problemsdctcompressive-sensingcryoemddpm
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Mar 23, 2026Mar 23, 2026

    • ProtoMech

      Public
      Official code repository for Protein Circuit Tracing via Cross-layer Transcoders
      Python
      •
      Apache License 2.0
      •2•6•0•0•Updated Mar 9, 2026Mar 9, 2026

    • GOLF

      Public
      Official code repository for GOLF: A Generative AI Framework for Pathogenicity Prediction of Myocilin OLF Variants
      Python
      •0•0•0•0•Updated Sep 30, 2025Sep 30, 2025

    • shap-zero

      Public
      Pip package for amortized Shapley values and interactions in biological sequence models
      Python
      •
      MIT License
      •0•7•0•0•Updated Sep 27, 2025Sep 27, 2025

    • LowNSAE

      Public
      Official code repository for Sparse Autoencoders for Low-N Protein Function Prediction and Design
      Python
      •0•7•0•0•Updated Sep 26, 2025Sep 26, 2025

    • LifeTracer

      Public
      LifeTracer: comprehensive Python package for 2D gas chromatography analysis and signature discovery
      classificationmass-spectrometrygcxgc
      classificationmass-spectrometrygcxgcsignature-discovery
      Python
      •
      MIT License
      •0•2•0•0•Updated Sep 25, 2025Sep 25, 2025

    • SpecMER

      Public
      Official code repo for SpecMER: Fast Protein Generation with K-mer Guided Speculative Decoding
      Python
      •0•2•0•0•Updated Sep 23, 2025Sep 23, 2025

    • shapzero

      Public
      Repository to reproduce experiments from SHAP zero Explains Biological Sequence Models with Near-zero Marginal Cost for Future Queries
      Python
      •0•5•0•0•Updated Sep 21, 2025Sep 21, 2025

    • GFast

      Public
      Official code repository for Efficient Algorithm for Sparse Fourier Transform of Generalized q-ary Functions
      Jupyter Notebook
      •0•2•0•0•Updated Jun 7, 2025Jun 7, 2025

    • AstroAgents

      Public
      AstroAgents: Multi-Agent AI for Hypothesis Generation from Mass Spectrometry Data
      mass-spectrometryagentsscience-research
      mass-spectrometryagentsscience-researchastrobiologyhypothesis-generationllm
      Python
      •
      MIT License
      •2•14•0•0•Updated Apr 1, 2025Apr 1, 2025

    • InteractionRecovery

      Public
      Official code repository for On Recovering Higher-order Interactions from Protein Language Models
      Jupyter Notebook
      •0•5•0•0•Updated May 10, 2024May 10, 2024
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