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    36 repositories

    • bento_public

      Public
      A publicly accessible portal for clinical datasets, where users are able to see high-level statistics of the data available through predefined variables of inte…
      TypeScript
      •
      GNU Lesser General Public License v3.0
      •2•1•0•12•Updated Apr 17, 2026Apr 17, 2026

    • bento_etl

      Public
      Service for Bento ETL operations
      Python
      •
      GNU General Public License v3.0
      •0•0•0•1•Updated Apr 17, 2026Apr 17, 2026

    • katsu

      Public
      Phenopackets-based metadata service for the Bento platform. Docs: https://metadata-service.readthedocs.io
      clinical-dataphenopacketsphenotypic-data
      clinical-dataphenopacketsphenotypic-data
      Python
      •
      GNU Lesser General Public License v3.0
      •7•5•0•9•Updated Apr 17, 2026Apr 17, 2026

    • bento_drs

      Public
      Data repository service for the Bento platform, based on GA4GH's DRS specification.
      Python
      •
      GNU Lesser General Public License v3.0
      •1•2•2•0•Updated Apr 17, 2026Apr 17, 2026

    • bento_notification_service

      Public
      Notification service for the Bento platform.
      Python
      •
      GNU Lesser General Public License v3.0
      •0•0•0•0•Updated Apr 16, 2026Apr 16, 2026

    • bento_lib

      Public
      Shared Python resources for Bento platform microservices.
      Python
      •
      GNU Lesser General Public License v3.0
      •0•2•9•7•Updated Apr 16, 2026Apr 16, 2026

    • bento

      Public
      The official Bento distribution - orchestration and deployment infrastructure for the Bento platform.
      Python
      •
      GNU Lesser General Public License v3.0
      •3•12•0•10•Updated Apr 16, 2026Apr 16, 2026

    • bento_web

      Public
      React-based data discovery and management portal for the Bento platform.
      reactchord
      reactchord
      JavaScript
      •
      GNU Lesser General Public License v3.0
      •3•0•25•6•Updated Apr 15, 2026Apr 15, 2026

    • fasta-checksum-utils

      Public
      Command-line utility and async Python library for checksumming FASTA files and individual contigs.
      Python
      •
      GNU Lesser General Public License v3.0
      •0•0•0•0•Updated Apr 14, 2026Apr 14, 2026

    • bento_reference_service

      Public
      Reference data (genomes & annotations) service for the Bento platform.
      Python
      •
      GNU Lesser General Public License v3.0
      •0•0•0•2•Updated Apr 14, 2026Apr 14, 2026

    • bento_beacon

      Public
      GA4GH Beacon v2 microservice for the Bento platform
      Python
      •0•0•0•4•Updated Apr 14, 2026Apr 14, 2026

    • bento_service_registry

      Public
      Microservice implementing the GA4GH Service Registry API for the Bento platform.
      flaskmicroservicega4gh
      flaskmicroservicega4ghchord
      Python
      •
      GNU Lesser General Public License v3.0
      •0•2•0•1•Updated Apr 14, 2026Apr 14, 2026

    • bento_drop_box_service

      Public
      Drop box and basic file management service for the Bento platform.
      Python
      •
      GNU Lesser General Public License v3.0
      •0•0•1•1•Updated Apr 14, 2026Apr 14, 2026

    • bento_wes

      Public
      Workflow execution service (based on GA4GH WES schemas) for the Bento platform.
      flaskworkflowga4gh
      flaskworkflowga4ghchord
      Python
      •
      GNU Lesser General Public License v3.0
      •0•0•1•1•Updated Apr 13, 2026Apr 13, 2026

    • bento-docs

      Public
      This repository hosts the versioned documentation for the Bento portal deployed to GitHub Pages.
      0•0•0•0•Updated Apr 13, 2026Apr 13, 2026

    • bento_build_action

      Public
      GitHub CI composite action to build development and production containers for Bento components.
      0•0•0•0•Updated Apr 13, 2026Apr 13, 2026

    • bento_keycloak_dist

      Public
      Keycloak Docker image distribution for the Bento platform. This is only relevant if a Bento instance is responsible for running its own IdP.
      Dockerfile
      •
      GNU Lesser General Public License v3.0
      •0•0•0•0•Updated Apr 13, 2026Apr 13, 2026

    • takuan

      Public
      An API for ingesting, organizing and querying data from transcriptomics experiments.
      Python
      •
      GNU Lesser General Public License v3.0
      •1•0•0•1•Updated Apr 13, 2026Apr 13, 2026

    • bento_event_relay

      Public
      Socket.IO event relay for the Bento platform.
      JavaScript
      •
      GNU Lesser General Public License v3.0
      •0•0•1•1•Updated Apr 10, 2026Apr 10, 2026

    • bento_aggregation_service

      Public
      Asynchronous search result aggregation service for the Bento platform.
      Python
      •
      GNU Lesser General Public License v3.0
      •0•2•12•0•Updated Apr 10, 2026Apr 10, 2026

    • bento_authorization_service

      Public
      Permissions and authorization service for the Bento platform.
      Python
      •
      GNU Lesser General Public License v3.0
      •0•0•0•1•Updated Apr 8, 2026Apr 8, 2026

    • bento-platform.github.io

      Public
      JavaScript
      •
      GNU Lesser General Public License v3.0
      •0•1•0•0•Updated Apr 2, 2026Apr 2, 2026

    • bento_gateway

      Public
      OpenResty-based gateway, configuration, & continuous building for inclusion in Bento deployments.
      Smarty
      •
      GNU Lesser General Public License v3.0
      •0•0•0•0•Updated Mar 31, 2026Mar 31, 2026

    • bento-file-display

      Public
      TypeScript component for displaying files in Bento front-ends.
      TypeScript
      •
      GNU Lesser General Public License v3.0
      •0•0•0•0•Updated Mar 18, 2026Mar 18, 2026

    • bento_charts

      Public
      Recharts wrapper for use in Bento platform front-ends
      TypeScript
      •
      MIT License
      •0•0•1•2•Updated Mar 18, 2026Mar 18, 2026

    • bento_postgis_dist

      Public
      Cross-platform build of Postgres + PostGIS for use with the Bento Katsu service.
      Dockerfile
      •
      MIT License
      •0•0•0•0•Updated Mar 16, 2026Mar 16, 2026

    • bento_base_images

      Public
      Automated Bento platform base image building.
      Dockerfile
      •
      GNU Lesser General Public License v3.0
      •0•0•0•0•Updated Mar 9, 2026Mar 9, 2026

    • bento_demo_dataset

      Public
      Partially synthetic demo dataset for Bento.
      datasetbento
      datasetbento
      Python
      •
      GNU Lesser General Public License v3.0
      •0•0•0•0•Updated Mar 3, 2026Mar 3, 2026

    • bento-helm-charts

      Public
      Helm Charts repo for Bento deployements on Kubernetes
      Go Template
      •
      GNU Lesser General Public License v2.1
      •0•0•0•1•Updated Feb 12, 2026Feb 12, 2026

    • discovery_config_validator

      Public
      Web service for validating Bento discovery configuration files.
      TypeScript
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 11, 2026Feb 11, 2026
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