Repositories list

• CPHI-automation

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 17, 2026Apr 17, 2026

• GenPipes

  Public
  Python

  •

  GNU Lesser General Public License v3.0

  •11 fork•99 stars•22 issues•00 pull requests•Updated Apr 17, 2026Apr 17, 2026

• freezeman

  Public
  Freezer management & sample tracking system

  reactjavascripttracker+ 9

  reactjavascripttrackerpythonsamplesciencedjangotypescriptpostgresqllims+ 2

  Python

  •33 forks•1010 stars•22 issues•22 pull requests•Updated Apr 17, 2026Apr 17, 2026

• triton

  Public
  TypeScript

  •00 forks•00 stars•44 issues•11 pull request•Updated Apr 15, 2026Apr 15, 2026

• project_tracking

  Public
  Python

  •

  GNU General Public License v3.0

  •00 forks•33 stars•22 issues•00 pull requests•Updated Apr 13, 2026Apr 13, 2026

• snv-benchmarking-dashboard

  Public
  Dashboard for SNV benchmarking results visualization

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 13, 2026Apr 13, 2026

• cgen_ont_benchmark

  Public
  Code repository for the CGEn ONT Benchmark Paper

  R

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 13, 2026Apr 13, 2026

• GenPipes_Docs

  Public
  GenPipes Read the Docs repository

  Mermaid

  •55 forks•2222 stars•1515 issues•11 pull request•Updated Apr 9, 2026Apr 9, 2026

• mhcut-browser

  Public
  Data browser web application for the MHcut project.

  JavaScript

  •

  GNU General Public License v3.0

  •11 fork•00 stars•00 issues•33 pull requests•Updated Mar 29, 2026Mar 29, 2026

• run_processing_dashboard

  Public
  Run Processing Dashboard

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 24, 2026Mar 24, 2026

• project_tracking_cli

  Public
  Python

  •

  GNU General Public License v3.0

  •00 forks•11 star•11 issue•00 pull requests•Updated Mar 24, 2026Mar 24, 2026

• c3g_tools

  Public
  Tools used by GenPipes or as standalone (former mugqic_tools)

  Perl

  •00 forks•11 star•00 issues•00 pull requests•Updated Mar 19, 2026Mar 19, 2026

• MoH_Automation

  Public
  Automation for MoH. It includes capabilities for file transfer, tracking, and genpipes, initiation.

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 6, 2026Mar 6, 2026

• cit_scripts

  Public
  CIT scripts for GenPipes

  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 13, 2026Feb 13, 2026

• Auto_NGS_Checkmate

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 29, 2026Jan 29, 2026

• puppet-magic_castle

  Public
  Puppet Environment repo for Magic Castle - https://github.com/ComputeCanada/magic_castle

  arc

  arc

  Puppet

  •

  MIT License

  •3030 forks•11 star•22 issues•00 pull requests•Updated Jan 19, 2026Jan 19, 2026

• magic_castle

  Public
  Terraform modules to replicate the HPC user experience in the cloud

  arc

  arc

  HCL

  •

  MIT License

  •4545 forks•11 star•00 issues•00 pull requests•Updated Jan 9, 2026Jan 9, 2026

• epivar-browser

  Public
  Source code for the EpiVar browser, a web application to search for eQTL/epigenetic signal-associated variants and merge bigWig tracks by genotype.

  genomicsepigeneticsgenomics-visualization+ 1

  genomicsepigeneticsgenomics-visualizationepigenomics

  JavaScript

  •

  GNU Lesser General Public License v3.0

  •00 forks•22 stars•00 issues•00 pull requests•Updated Jan 9, 2026Jan 9, 2026

• MultiQC_c3g

  Public
  MultiQC plugin specific to GenPipes and C3G reports

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 22, 2025Dec 22, 2025

• parse_track_hub

  Public
  Perl

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 18, 2025Dec 18, 2025

• digviewer

  Public
  JavaScript

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 18, 2025Dec 18, 2025

• FOLLOW

  Public archive
  JavaScript

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 18, 2025Dec 18, 2025

• phenotyper

  Public
  By Romain Gregoire (migrated from bitbucket)

  JavaScript

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 18, 2025Dec 18, 2025

• monitor

  Public
  C3G Run Processing monitor (for reporting)

  Groovy

  •00 forks•00 stars•11 issue•11 pull request•Updated Dec 11, 2025Dec 11, 2025

• mEGAdata

  Public
  EGA submissions made easy

  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 19, 2025Sep 19, 2025

• PARPAL

  Public
  GZ - Kuzmin website

  Python

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 22, 2025Jul 22, 2025

• web-app-template

  Public template
  00 forks•00 stars•00 issues•00 pull requests•Updated Jul 21, 2025Jul 21, 2025

• k8s-opentofu-module

  Public archive
  Provision OpenStack resources for an HA K8S cluster using OpenTofu.

  HCL

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 15, 2025Jul 15, 2025

• puppet-module-globus

  Public
  Globus deployment for MC on SD4H

  Ruby

  •

  Other

  •88 forks•00 stars•11 issue•00 pull requests•Updated Jun 13, 2025Jun 13, 2025

• Template_Convertor

  Public
  MOH template conversion project

  Python

  •00 forks•11 star•11 issue•00 pull requests•Updated Apr 3, 2025Apr 3, 2025