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    19 repositories

    • waves

      Public
      Scripts for waves project
      R
      •0•1•0•0•Updated Mar 30, 2026Mar 30, 2026

    • covidestim

      Public
      Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States
      stanr-packagemcmc
      stanr-packagemcmccovid-19
      C++
      •7•27•7•0•Updated Aug 14, 2025Aug 14, 2025

    • Waves-Manuscript

      Public
      Repository to partially reproduce 'Waves' analysis. Due to the size of some files the we trimmed them out to specific dates.
      spatial-analysisspatial-datainla
      spatial-analysisspatial-datainlacovid-19covid19-data
      R
      •0•0•0•0•Updated Jun 30, 2025Jun 30, 2025

    • immunity-trends

      Public
      Analytical code corresponding to the manuscript, National- and state-level SARS-CoV-2 immunity trends from January 2020 to December 2023: a mathematical modelin…
      R
      •
      MIT License
      •0•0•0•0•Updated Apr 24, 2025Apr 24, 2025

    • covidestim-sources

      Public
      Data pipeline for covidestim, + analysis of revisioning in public COVID data
      makecovid-19covid-tracking-project
      makecovid-19covid-tracking-project
      R
      •0•3•0•0•Updated Apr 2, 2024Apr 2, 2024

    • covid-dash

      Public
      Next.js/d3/React website displaying data from Covidestim model results
      reactd3website
      reactd3websitejsnextjscovid-19
      HTML
      •
      Other
      •23•0•0•0•Updated Mar 18, 2024Mar 18, 2024

    • data-archive

      Public
      Repository with archived output data from analyses using covidestim model runs
      0•1•0•0•Updated Jul 19, 2023Jul 19, 2023

    • dailyFlow

      Public
      Nextflow workflow for daily county/state runs
      Nextflow
      •0•0•0•0•Updated May 4, 2023May 4, 2023

    • api_docs

      Public
      How to use our public API
      0•0•0•0•Updated Jul 27, 2022Jul 27, 2022

    • webworker

      Public
      Container with scripts for taking model results and formatting them for public distribution
      R
      •0•0•0•0•Updated Jul 23, 2022Jul 23, 2022

    • dbstan

      Public
      Effortlessly move RStan results into/out of your database
      dbirstanstan
      dbirstanstandbplyr
      R
      •0•0•0•0•Updated Jul 8, 2022Jul 8, 2022

    • vaccineAdjust

      Public
      R package for doing pre-model vaccine adjustment
      R
      •
      Other
      •0•0•0•0•Updated Jun 28, 2022Jun 28, 2022

    • omicron-testing

      Public
      R
      •0•0•0•0•Updated May 17, 2022May 17, 2022

    • idc

      Public
      Input data classifier for identifying reporting system state
      Python
      •0•0•0•0•Updated Dec 21, 2021Dec 21, 2021

    • cdc-vaccine-data

      Public
      Daily scrape of CDC county-level vaccinations data
      Shell
      •0•0•0•0•Updated Nov 18, 2021Nov 18, 2021

    • openconnect-proxy

      Public
      docker openconnect proxy
      Shell
      •
      GNU General Public License v3.0
      •53•0•0•0•Updated Sep 13, 2021Sep 13, 2021

    • targets-stan

      Public
      An example project to validate a Stan model in a targets pipeline
      R
      •
      Other
      •4•0•0•0•Updated Apr 21, 2021Apr 21, 2021

    • internal-dashboard

      Public archive
      0•0•0•0•Updated Feb 24, 2021Feb 24, 2021

    • covidestim-products

      Public archive
      Results and setup of daily covidestim runs, as well as other research experiments
      HTML
      •0•0•0•1•Updated Nov 9, 2020Nov 9, 2020
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