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    • CELLISA

      Public
      A User-Friendly Program for Evaluating Cell-Cell Binding
      Python
      0000Updated Apr 9, 2026Apr 9, 2026
    • HBS_GAMES

      Public
      supporting code for HBS model in the GAMES v2.0.0 framework
      Python
      GNU General Public License v3.0
      1100Updated Feb 21, 2025Feb 21, 2025
    • GAMES

      Public
      GAMES (Generation and Analysis of Mathematical Models for Exploring Synthetic systems): A dynamic model development workflow for rigorous characterization of sy…
      Python
      GNU General Public License v3.0
      2100Updated Jul 15, 2024Jul 15, 2024
    • Python
      GNU General Public License v3.0
      0000Updated Jul 4, 2024Jul 4, 2024
    • Python
      0100Updated Jun 24, 2024Jun 24, 2024
    • Supporting code for the homework set defined in the GAMES education paper ("Teaching rigorous, reproducible model development using synthetic biology" in Chemic…
      Python
      GNU General Public License v3.0
      0100Updated Apr 18, 2024Apr 18, 2024
    • Documentation for the PyFlowBAT Package.
      HTML
      0000Updated Nov 9, 2023Nov 9, 2023
    • PlantDX_GAMES

      Public archive
      supporting code for the Plant-DX model
      Jupyter Notebook
      0000Updated Jun 14, 2023Jun 14, 2023
    • Python
      0000Updated Sep 2, 2022Sep 2, 2022
    • MESAFRET

      Public
      Accompanying supplementary software for the following publication: Elucidation and refinement of synthetic receptor mechanisms
      MATLAB
      MIT License
      0000Updated Sep 13, 2020Sep 13, 2020
    • Model-guided design of mammalian genetic programs
      MATLAB
      MIT License
      0000Updated Sep 3, 2020Sep 3, 2020
    • Macrophages employ quorum licensing to regulate collective activation
      MATLAB
      MIT License
      0000Updated Nov 12, 2019Nov 12, 2019
    • COMET

      Public template
      The COMET toolkit for composing customizable genetic programs in mammalian cells
      MATLAB
      MIT License
      0000Updated Nov 12, 2019Nov 12, 2019
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