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22 repositories

sprocket.bio
Public
The website for the Sprocket workflow execution engine.
Vue
•2•0•2•1•Updated Apr 25, 2026Apr 25, 2026
sprocket
Public
A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).
workflow bioinformatics workflow-engine
workflow bioinformatics workflow-engine bioinformatics-pipeline wdl wdl-workflow wdl-devtools
Rust
•
Apache License 2.0
•57•156•93•25•Updated Apr 24, 2026Apr 24, 2026
planetary
Public
A performant Kubernetes-based task executor for the Task Execution Service (TES) specification.
Rust
•
Apache License 2.0
•4•17•9•0•Updated Apr 24, 2026Apr 24, 2026
sprocket.nvim
Public
Neovim plugin for WDL development powered by Sprocket
Lua
•
Apache License 2.0
•1•3•0•0•Updated Apr 23, 2026Apr 23, 2026
sprocket-zed
Public
WDL language support for Zed using the Sprocket LSP.
Rust
•
Apache License 2.0
•1•1•0•1•Updated Apr 23, 2026Apr 23, 2026
sprocket-action
Public
Run Sprocket as part of a CI/CD pipeline with GitHub Actions.
workflow bioinformatics workflow-engine
workflow bioinformatics workflow-engine bioinformatics-pipeline wdl wdl-workflow wdl-devtools
Shell
•
Apache License 2.0
•2•6•0•0•Updated Apr 23, 2026Apr 23, 2026
crankshaft
Public
A Rust-based, headless workflow execution framework supporting local, cloud, and HPC.
workflow bioinformatics workflow-engine
workflow bioinformatics workflow-engine
Rust
•
Apache License 2.0
•25•52•4•1•Updated Apr 23, 2026Apr 23, 2026
fq
Public
Command line utility for manipulating FASTQ files
rust bioinformatics genomics
rust bioinformatics genomics next-generation-sequencing illumina fastq fastq-files
Rust
•
MIT License
•6•94•4•3•Updated Apr 14, 2026Apr 14, 2026
omkit
Public
Rust
•
Apache License 2.0
•0•1•0•1•Updated Apr 3, 2026Apr 3, 2026
sprocket-vscode
Public
Visual Studio Code extension for Sprocket.
workflow bioinformatics workflow-engine
workflow bioinformatics workflow-engine vscode vscode-extension wdl wdl-workflow wdl-devtools
TypeScript
•
Apache License 2.0
•9•9•1•0•Updated Apr 2, 2026Apr 2, 2026
wdl-lints
Public
A website outlining the lints available in the `wdl` family of crates.
Rust
•1•0•0•1•Updated Mar 27, 2026Mar 27, 2026
tree-sitter-wdl
Public
Tree-sitter grammar for WDL.
C
•
Apache License 2.0
•0•2•0•0•Updated Mar 20, 2026Mar 20, 2026
cloud-copy
Public
A cloud storage copy library and utility.
Rust
•
Apache License 2.0
•1•2•0•0•Updated Mar 20, 2026Mar 20, 2026
chainfile
Public
A crate for working with genomics chain files.
rust bioinformatics genomics
rust bioinformatics genomics liftover
Rust
•
Apache License 2.0
•3•15•0•0•Updated Mar 19, 2026Mar 19, 2026
omics
Public
Foundations for the Rust omics ecosystem.
Rust
•
Apache License 2.0
•7•16•2•5•Updated Mar 19, 2026Mar 19, 2026
rfcs
Public
Requests For Comments for the St. Jude Rust Labs project
Shell
•
Apache License 2.0
•0•1•0•2•Updated Feb 26, 2026Feb 26, 2026
http-cache-stream
Public
A HTTP cache that supports streaming bodies.
Rust
•
Apache License 2.0
•2•4•1•0•Updated Feb 4, 2026Feb 4, 2026
tes
Public
A crate for working with the Task Execution Service (TES) specification.
workflow bioinformatics workflow-engine
workflow bioinformatics workflow-engine ga4gh tes ga4gh-tes
Rust
•
Apache License 2.0
•3•13•0•0•Updated Jan 8, 2026Jan 8, 2026
wdl
Public archive
Rust crates for working with Workflow Description Language (WDL) documents.
workflow bioinformatics workflow-engine
workflow bioinformatics workflow-engine ngs next-generation-sequencing wdl wdl-workflow
Rust
•
Apache License 2.0
•36•62•0•1•Updated Sep 23, 2025Sep 23, 2025
ngs
Public
Command line utility for working with next-generation sequencing files.
rust bioinformatics genomics
rust bioinformatics genomics ngs next-generation-sequencing
Rust
•
Apache License 2.0
•3•38•2•2•Updated Jun 24, 2025Jun 24, 2025
atlas
Public
Enables storing, querying, transforming, and visualizing of multidimensional count data.
Rust
•
Apache License 2.0
•0•1•0•0•Updated Apr 2, 2025Apr 2, 2025
.github
Public
0•0•0•0•Updated Feb 18, 2025Feb 18, 2025

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St. Jude Rust Labs

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All

22 repositories

sprocket.bio

sprocket

planetary

sprocket.nvim

sprocket-zed

sprocket-action

crankshaft

fq

omkit

sprocket-vscode

wdl-lints

tree-sitter-wdl

cloud-copy

chainfile

omics

rfcs

http-cache-stream

tes

wdl

ngs

atlas

.github

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Repositories list

22 repositories