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@zipkinlab Zipkin Quantitative Ecology Lab

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    56 repositories

    • Williams_etal_2026_NewPhytol

      Public
      Tropical dry forest ontogenetic trait shifts
      R
      •
      MIT License
      •1•0•0•0•Updated Jan 30, 2026Jan 30, 2026

    • zipkinlab.github.io

      Public
      http://zipkinlab.github.io - Code aggregation site for projects in the Zipkin lab
      HTML
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      Mozilla Public License 2.0
      •1•4•1•0•Updated Aug 27, 2025Aug 27, 2025

    • PenguinChallenge

      Public
      In this activity, students will learn about a method for surveying wild populations of penguins, and they will get to practice this method by counting colonies …
      0•0•0•0•Updated Aug 18, 2025Aug 18, 2025

    • Danaus

      Public
      This repository contains all necessary materials for a 'Math & Monarchs Module' to be used for K-12 educational purposes. This work is a product of @lxwrght wit…
      R
      •2•0•0•0•Updated Aug 18, 2025Aug 18, 2025

    • ButterflyCountsOutreach

      Public
      R
      •1•0•0•0•Updated Aug 18, 2025Aug 18, 2025

    • Leuenberger_etal_2025_PNAS

      Public
      Leuenberger, W., J. W. Doser, M. W. Belitz, L. Ries, N. M. Haddad, W. E. Thogmartin, and E. F. Zipkin. 2025. Three decades of declines restructure butterfly com…
      R
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      MIT License
      •1•0•0•0•Updated Aug 8, 2025Aug 8, 2025

    • GitHub_HPCC_Tutorial

      Public
      A tutorial on how to use GitHub and the HPCC through RStudio.
      HTML
      •10•1•0•0•Updated Jul 28, 2025Jul 28, 2025

    • Davis_etal_2025_EcoApps

      Public
      R
      •1•1•0•0•Updated Jul 15, 2025Jul 15, 2025

    • Gilbert_etal_2025_Ecography

      Public
      R
      •1•0•0•0•Updated Jul 15, 2025Jul 15, 2025

    • Ayebare_etal_2025_Ecosphere

      Public
      Improving population analysis using indirect count data: A case study of chimpanzees and elephants
      R
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      MIT License
      •1•0•0•0•Updated Jul 15, 2025Jul 15, 2025

    • Policies

      Public
      Lab policies and operating procedures
      14•5•0•0•Updated May 23, 2025May 23, 2025

    • Doser_et_al_2024_MEE

      Public
      Doser, J. W., Finley, A. O., Kéry, M., & Zipkin, E. F. (2024). spAbundance: An R package for single-species and multi-species spatially-explicit abundance model…
      R
      •
      MIT License
      •1•0•0•0•Updated May 9, 2025May 9, 2025

    • Williams_etal_2024_NatComm

      Public
      Code and data for Williams, Zipkin, and Brodie (in review)
      R
      •
      MIT License
      •1•0•0•0•Updated May 9, 2025May 9, 2025

    • Gilbert_etal_2024_Ecol

      Public
      R
      •1•0•0•0•Updated May 9, 2025May 9, 2025

    • Gilbert_etal_2024_Ecol_A

      Public
      R
      •1•0•0•0•Updated Sep 13, 2024Sep 13, 2024

    • Doser_etal_2024_GEB

      Public
      R
      •
      MIT License
      •2•1•0•0•Updated Mar 22, 2024Mar 22, 2024

    • Doser_etal_2024_JABES

      Public
      R
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      MIT License
      •1•0•0•0•Updated Mar 22, 2024Mar 22, 2024

    • Ayebare_etal_2023_ProcB

      Public
      An environmental habitat gradient and within-habitat segregation enable co-existence of ecologically similar bird species
      R
      •1•0•0•0•Updated Mar 18, 2024Mar 18, 2024

    • Davis_etal_2022_EcolAndEvol

      Public
      Davis, K. L., Silverman, E. D., Sussman, A. L., Wilson, R. R., Zipkin, E. F. (2022). Errors in aerial survey count data: Identifying pitfalls and solutions. Eco…
      abundancecount-dataimperfect-detection
      abundancecount-dataimperfect-detectionstudy-designaerial-surveycounting-errornondetectionspecies-misidentification
      R
      •
      MIT License
      •1•1•0•0•Updated Mar 17, 2024Mar 17, 2024

    • Zipkin_etal_2023_JAE

      Public
      Zipkin E.F. , Doser J.W., Davis C.L., Leuenberger W., Ayebare S., Davis K.L., (2023) Integrated community models: A framework combining multi-species data sour…
      R
      •2•1•0•0•Updated Mar 9, 2024Mar 9, 2024

    • Farr_etal_2024_MEE

      Public
      R
      •1•0•0•0•Updated Mar 8, 2024Mar 8, 2024

    • Doser_etal_2022_MEE

      Public
      Doser, J. W., Leuenberger, W., Sillett, T. S., Hallworth, M. T., & Zipkin, E. F. (2022). Integrated community occupancy models: A framework to assess occurrence…
      R
      •1•0•0•0•Updated Nov 20, 2023Nov 20, 2023

    • Doser_etal_2022_MEE_A

      Public
      Doser, J. W., Finley, A. O., Kéry, M., & Zipkin, E. F. (2022). spOccupancy: An R package for single-species, multi-species, and integrated spatial occupancy mo…
      R
      •2•0•0•0•Updated Sep 11, 2023Sep 11, 2023

    • Davis_etal_2023_BioCons

      Public
      Davis, K.L., S.P. Saunders, S. Beilke, E.R. Ford, J. Fuller, A. Landgraf, E.F. Zipkin. (2023). Breeding season management is unlikely to improve population viab…
      R
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      MIT License
      •1•0•0•0•Updated Sep 11, 2023Sep 11, 2023

    • Zylstra_etal_2022_GCB

      Public
      Zylstra, E. R., Neupane, N., & Zipkin, E. F. (2022). Multi-season climate projections forecast declines in migratory monarch butterflies. Global Change Biology.
      R
      •2•1•0•0•Updated Sep 8, 2022Sep 8, 2022

    • Farr_etal_2022_ConsBiol

      Public
      M.T. Farr, T. O’Brien, C.B. Yackulic, and E.F. Zipkin. (2022). Quantifying the conservation status and abundance trends of wildlife communities with detection-n…
      community-ecologydemographic-ratesmultiple-species-modeling
      community-ecologydemographic-ratesmultiple-species-modelingpopulation-viabilityunmarked-modeling
      R
      •2•3•0•0•Updated Sep 8, 2022Sep 8, 2022

    • Wright_etal_2022_EcoApps

      Public
      Wright, A. D., Grant, E. H. C., Zipkin, E. F. (2022). A comparison of monitoring designs to assess wildlife community parameters across spatial scales. Ecologic…
      R
      •
      MIT License
      •1•0•0•0•Updated Jun 9, 2022Jun 9, 2022

    • Cabodevilla_etal_2022_AgEE

      Public
      Cabodevilla, X., Wright, A. D., Villanua, D., Arroyo, B., and Zipkin, E. F. (2022). The implementation of irrigation leads to declines in farmland birds. Agricu…
      R
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      MIT License
      •0•0•0•0•Updated Feb 11, 2022Feb 11, 2022

    • Zylstra_etal_2021_NEE

      Public
      R
      •3•3•0•0•Updated Aug 30, 2021Aug 30, 2021

    • Doser_etal_2021_EcoApps

      Public
      Doser, J. W., A. S. Weed, E. F. Zipkin, K. M. Miller, and A. O. Finley. 2021. Trends in bird abundance differ among protected forests but not bird guilds. Ecolo…
      R
      •1•0•0•0•Updated Jun 17, 2021Jun 17, 2021
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