This repository provides the complete set of R scripts used to generate all main and supplementary figures for the jazzPanda paper.

• jazzPanda R package: Repository
• Preprint: bioRxiv link
• Raw/Processed data: Download from Zenodo
• Analysis workflow: Workflow documentation

.
├── scripts/
│   ├── main/                 
│   └── supp/                 
├── figures/                  # outputs (PDF/JPG) — created by scripts
│   ├── main/
│   └── supp/
├── data/
├── .gitignore
└── README.md                 # you are here

Raw experimental data can be accessed via the links below. Processed outputs used in the manuscript are included in the repository under the data/ directory, with intermediate results stored as .Rds files. For very large processed datasets that exceed the repository size limits, we provide access via Zenodo.

-1) 10x Xenium Mouse brain data 🔗

-2) 10x Xenium Human HER2+ breast cancer data 🔗

-3) 10x Xenium Human lung cancer data 🔗

-4) Nanostring CosMX Human liver healthy and cancer data 🔗

-5) Vizgen MERSCOPE Human breast cancer data 🔗

Processed outputs are organized in the data/ directory of this repository, with intermediate results saved as .Rds files. Very large processed datasets that exceed repository size limits are deposited on Zenodo for convenient download.