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When ire-using an auxiliary set, Measurement sets from other Analysis sets are included when generating the per sample metadata

Status: Open.

#68 In pinellolab/CRISPR_Pipeline;

· alexbarrera opened on Mar 19, 2026

Error when having multiple sequencing runs for the same measurement set

Status: Open.

#64 In pinellolab/CRISPR_Pipeline;

· alexbarrera opened on Mar 11, 2026

Compute test results for non-targeting guides/elements

Status: Open.

#48 In pinellolab/CRISPR_Pipeline;

· logan-blaine opened on Nov 21, 2025

Option to organize outputs by dataset/condition

Status: Open.

#47 In pinellolab/CRISPR_Pipeline;

· OlgaPushkarev opened on Nov 7, 2025

example_gasperini metadata is outdated.

Status: Open.

#6 In pinellolab/CRISPR_Pipeline;

· Patrick-McKeever opened on Apr 14, 2025

Implementing and testing guide pattern matching

enhancementNew feature or requestNew feature or request

Status: Open.

#3 In pinellolab/CRISPR_Pipeline;

· LucasSilvaFerreira opened on Jan 31, 2025

Pipeline executing (Error at : mapping_rna_pipeline:downloadReference)

bugSomething isn't workingSomething isn't working

Status: Open.

#2 In pinellolab/CRISPR_Pipeline;

· LucasSilvaFerreira opened on Jan 31, 2025

some issues found so far

bugSomething isn't workingSomething isn't working

Status: Open.

#1 In pinellolab/CRISPR_Pipeline;

· zhaoshuoxp opened on Dec 20, 2024