First release candidate

🎉 Great work ! We are almost there !

What's Changed

• add eddy option - nb of iteration by @EliseCos in #6
• [ENH] update containers by @arnaudbore in #12
• [ENH] Add mask as optional input by @arnaudbore in #11
• [BF+ENH] fix devcontainer + add fodf reconstruction by @arnaudbore in #13
• [WIP] Update containers to scilus and scilpy 2.2.0 by @arnaudbore in #15
• preqc and qc by @arnaudbore in #16
• 50um data fix by @arnaudbore in #17
• Add deploy documentation by @arnaudbore in #18
• Improve parameters and add pipeline schema by @arnaudbore in #19
• [MODULE] update fodf by @arnaudbore in #20
• Quick fix curta profile + some missing params by @arnaudbore in #21
• change channel nnunet by @EliseCos in #22
• Update repo name by @arnaudbore in #23
• correction outputs for dti, qball and registration by @EliseCos in #24
• add Brkraw convention strides by @EliseCos in #25
• Update main with conditional processes by @arnaudbore in #26
• [ENH] Update modules by @arnaudbore in #27
• [ENH] Fix schema by @arnaudbore in #28
• add ouputs fodf .config by @EliseCos in #29
• correct output by @EliseCos in #30
• add possitibily to tracking probabilist by @EliseCos in #33
• Update preQC by @EliseCos in #34
• fix _files in main.nf + update local tracking by @EliseCos in #35
• [ENH] Add docker files by @arnaudbore in #37
• add reference RGB by @EliseCos in #36
• Extractmasks improvements by @EliseCos in #38
• change to sf-mouse by @EliseCos in #40

Full Changelog: 0.1.0dev...0.1.0-rc1

First nf-mouse_flow release 🎉

This is our first mouse_flow release. Although we are well aware there are still a lot of work to do, this release is just a beginning and has at least, the merit to exist.

Congrats @EliseCos for the great work !

What's Changed

• fix registration : b0 masked by @EliseCos in #2
• Add eddy options by @EliseCos in #3
• [ENH] Add qball and fix tractography by @arnaudbore in #5

New Contributors

• @EliseCos made their first contribution in #2
• @arnaudbore made their first contribution in #5

Full Changelog: https://github.com/scilus/nf-mouse_flow/commits/0.1.0dev