Assembly of Phylogenomic Datasets from High-Throughput Sequencing data

A Nextflow pipeline for evaluating assembly quality

Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs

A nextflow pipeline for polishing CLR assemblies

A tool to filter BUSCO output into single-copy gene files for phylogenomics

scripts associated with yam genome assembly

Snakemake workflow to construct species phylogenies using BUSCOs

Run Assembly statistics on a genome assembly (BUSCO and assemblyStats and new_Assemblathon.pl)

Making BUSCO HMMs useable in Anvi'o.

A pipeline to construct phylogenetic tree using BUSCOs

Building a fully automized pipeline for phylogenomic analyses based on the BUSCO toolkit

Reproducible phylogenomics pipeline that builds partitioned species trees from BUSCO v5 results.

A comparative annotation toolkit (CAT) pipeline for 301 Drosophila genomes.

Create a SNAP model from BUSCO output

phylogeny and collinearity aware assembly evaluation toolkit.

Docker container for W2RAP based on CentOS

Run multiple metagenome filtering programs using Docker containers

Genome assembly and annotation pipeline for Akodon using 10x Genomics Supernova and BRAKER-based gene prediction on HPC.

Genome Annotation: Hands-on Training