Tools for fast and flexible genome assembly scaffolding and improvement

The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks

The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.

Long-reads Gap-free Chromosome-scale Assembler

Close assembly gaps using long-reads at high accuracy.

A scalable implimentation of HANTS for time sereis reconstruction in remote sensing on Google Earth Engine platform

Tools for Downloading, Customizing, and Processing Time Series of Satellite Images from Landsat, MODIS, and Sentinel

KEGG Module Evaluation Tool

Gap2Seq is a gap filling and insertion genotyping tool.

Code from the paper Generative Networks for Spatio-Temporal Gap Filling of Sentinel-2 Reflectances

Time series processing library

YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.

hesseflux provides functions used in the processing and post-processing of the Eddy covariance flux data of the ICOS ecosystem site FR-Hes.

GapFill: gap filling functions for motion capture marker data

Missing earthquake data reconstruction in the space-time-magnitude domain

Toolkit created to do extraction, gap-filling and trend analysis over Sentinel 2 time-series from Earth Engine

Value propagation-based spatial/spatio-temporal interpolation

Python library for quality control and reconstruction of meteorological data

GapT: Gap-filling Transformer for Multivariate Timeseries